PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna30181.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 399aa MW: 43890.7 Da PI: 4.3601

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna30181.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	47.9	2.4e-15	310	369	2	61
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely 61 ++lL++cA+av+s d+++a++ L+ +++++sp+gd +qRla+y++++L++rl+ vs+++ mrna30181.1-v1.0-hybrid 310 QTLLTQCAQAVASFDKRNATEQLKLIRQHSSPYGDGTQRLAHYMANGLEERLTAAVSSVS 369 689**************************************************9666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.037	283	398	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.3E-13	310	369	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDTLLEEFPN SMNNFMFDQN SIPSFPDHNP PDQFEANHEL TNLSFSPANS YPYSDFSPSS 60 SSGLSSEGVN SPDDSNTILR FISEMLMQEE DLENKPCMLQ DCLALRAAEK SLYDVLVQED 120 PSSTSQNLAS TYQNVGSPDD VSNHSSSSSH AASNWVDSDF DCVQEVLDTV IPNPFVSNGK 180 GGVTDLEGNS SFPADARQLS SDVNFSPDKG ESESRNGSRS KKNRYREDGD YVDEERSYKQ 240 SAVYADEAEP EEMFDQVLLC QGDKSRSSPQ VSELQDGNGK LQRNGKAKGS KAKKTGKKKP 300 DDNKEMVDLQ TLLTQCAQAV ASFDKRNATE QLKLIRQHSS PYGDGTQRLA HYMANGLEER 360 LTAAVSSVSL YKQSGEYHDP ESGIRTNLKT EDDKKVAA*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDTLLEEFPN SMNNFMFDQN SIPSFPDHNP PDQFEANHEL TNLSFSPANS YPYSDFSPSS  60
SSGLSSEGVN SPDDSNTILR FISEMLMQEE DLENKPCMLQ DCLALRAAEK SLYDVLVQED  120
PSSTSQNLAS TYQNVGSPDD VSNHSSSSSH AASNWVDSDF DCVQEVLDTV IPNPFVSNGK  180
GGVTDLEGNS SFPADARQLS SDVNFSPDKG ESESRNGSRS KKNRYREDGD YVDEERSYKQ  240
SAVYADEAEP EEMFDQVLLC QGDKSRSSPQ VSELQDGNGK LQRNGKAKGS KAKKTGKKKP  300
DDNKEMVDLQ TLLTQCAQAV ASFDKRNATE QLKLIRQHSS PYGDGTQRLA HYMANGLEER  360
LTAAVSSVSL YKQSGEYHDP ESGIRTNLKT EDDKKVAA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna30181.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011461324.1	0.0	PREDICTED: scarecrow-like protein 11
TrEMBL	A0A2P6QJ11	0.0	A0A2P6QJ11_ROSCH; Putative transcription factor GRAS family
STRING	XP_004295970.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-36	GRAS family protein

Link Out ? help Back to Top
Phytozome	mrna30181.1-v1.0-hybrid