PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna30182.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 379aa MW: 42100.3 Da PI: 4.649

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna30182.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	40.6	3.9e-13	305	356	4	55
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 lL++cA+av s d + a++ L+ +++++sp+gd +qRla+y++++L++rl+ mrna30182.1-v1.0-hybrid 305 LLTQCAKAVISYDISTANEKLKLIRQHSSPHGDGTQRLAHYLANGLEERLNA 356 79************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.87	276	378	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-10	305	356	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MDEFPSSFNN FMSNQNSIPT FSVQNTLVTE SESDQHNHEL SDPSFFPSNP NPPPHDSSSS 60 LDLSSEGEYY SPSSATLQYI SQMLMEEELE NTPCMLQDCL ALQAAEKSLH DVLIHQYPSS 120 TTNLLASSIH QTAEISEDLI NHSSNSSTAA REWNDGSGWI SFQNVLESHP LENNTLLVPN 180 PFSSNGKGGI LDLERGSSFL KQPREVTEDG NDSTNRSRSK KDRQREDSSY QEEGRSNKQT 240 AFYAAETEPP EMLDKVLLCQ YTISCSSLQE SDQLKRASGH RGFKGKRTGK KMVDDNRAVV 300 DFQILLTQCA KAVISYDIST ANEKLKLIRQ HSSPHGDGTQ RLAHYLANGL EERLNAAVPL 360 DGKAEYYMLF LAGNLLDF*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MDEFPSSFNN FMSNQNSIPT FSVQNTLVTE SESDQHNHEL SDPSFFPSNP NPPPHDSSSS  60
LDLSSEGEYY SPSSATLQYI SQMLMEEELE NTPCMLQDCL ALQAAEKSLH DVLIHQYPSS  120
TTNLLASSIH QTAEISEDLI NHSSNSSTAA REWNDGSGWI SFQNVLESHP LENNTLLVPN  180
PFSSNGKGGI LDLERGSSFL KQPREVTEDG NDSTNRSRSK KDRQREDSSY QEEGRSNKQT  240
AFYAAETEPP EMLDKVLLCQ YTISCSSLQE SDQLKRASGH RGFKGKRTGK KMVDDNRAVV  300
DFQILLTQCA KAVISYDIST ANEKLKLIRQ HSSPHGDGTQ RLAHYLANGL EERLNAAVPL  360
DGKAEYYMLF LAGNLLDF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna30182.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011461323.1	0.0	PREDICTED: scarecrow-like protein 11
TrEMBL	M5W391	1e-98	M5W391_PRUPE; Uncharacterized protein
STRING	XP_004295970.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-31	GRAS family protein

Link Out ? help Back to Top
Phytozome	mrna30182.1-v1.0-hybrid