PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30215.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 200aa    MW: 22055.2 Da    PI: 6.3966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30215.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000122749123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C++ Fs+   L  H++ H
  mrna30215.1-v1.0-hybrid 27 YECTFCKRGFSNAQALGGHMNIH 49
                             99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.67E-72454No hitNo description
Gene3DG3DSA:3.30.160.601.6E-52553IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5722754IPR007087Zinc finger, C2H2
SMARTSM003550.00992749IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MESGDQQTPE NSGDQQVTSQ VAAAKSYECT FCKRGFSNAQ ALGGHMNIHR KDKAKLKQVS  60
SSANIVETKQ QQQRLPVEIP KMPQSYSPIL LKVNPSITSS EAVADHIERS ATTIRESSWP  120
ADWFLNDKEG ENKLRHQLPL FSQAPSDQDH HSQGGQQQQL EDHGNQSDKG SDLDLELRLG  180
PEPQDSSSTP GKATTRKFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30215.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295977.21e-147PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2P6QJ551e-104A0A2P6QJ55_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004295977.11e-147(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein