PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna30337.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WOX

Protein Properties

Length: 213aa MW: 22711.9 Da PI: 6.3539

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna30337.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.7	1.3e-15	31	91	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+ +++eq+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ mrna30337.1-v1.0-hybrid 31 RSRWIPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 91 89***************99***********************************997 PP
2	Wus_type_Homeobox	105.3	3.8e-34	30	93	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW P+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q mrna30337.1-v1.0-hybrid 30 VRSRWIPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 93 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-8	14	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.64E-14	24	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.272	27	92	IPR001356	Homeobox domain
SMART	SM00389	2.8E-6	29	96	IPR001356	Homeobox domain
Pfam	PF00046	2.2E-13	31	91	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MEDHQGQAGG GQEAKEPNSH SSSEKSTEPV RSRWIPKPEQ ILILESIFNS GMVNPPKEET 60 VRIRKLLEKF GSVGDANVFY WFQNRRSRSR RRQRQLQASL EQRNQLAAAD QQVGGAIQYG 120 SCSSATSFSA PPSPPPPAAA MAFGASTPST FVSNYDLVGG SSSSSCAPMA ADDHFFSVSG 180 QMGFPEIEQH SSSGETSALG PSDASSLHFQ SG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna30337.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289578.2	1e-153	PREDICTED: WUSCHEL-related homeobox 11
Swissprot	Q8GY25	1e-37	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	A0A2P6RHC6	1e-109	A0A2P6RHC6_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004289578.1	1e-153	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5898	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	1e-35	WUSCHEL related homeobox 12

Link Out ? help Back to Top
Phytozome	mrna30337.1-v1.0-hybrid

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]