PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30394.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 1029aa    MW: 115053 Da    PI: 6.4827
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30394.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.1e-24206307199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+
  mrna30394.1-v1.0-hybrid 206 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDS 289
                              99*****************************8544444..48******************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              v+F   ++++ +l+++++r+
  mrna30394.1-v1.0-hybrid 290 VLFI--WNEKNQLLLGIRRA 307
                              ****..8899999****997 PP
2Auxin_resp116.72e-38332415183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aahaast+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld  rWpnS+Wrs+k
  mrna30394.1-v1.0-hybrid 332 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTHISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVK 415
                              79*********************************97789*****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-48191335IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-42199321IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-21205306No hitNo description
SMARTSM010192.0E-24206308IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548206308IPR003340B3 DNA binding domain
PfamPF023624.3E-22206307IPR003340B3 DNA binding domain
PfamPF065077.5E-34332415IPR010525Auxin response factor
PfamPF023091.7E-7818914IPR033389AUX/IAA domain
SuperFamilySSF542772.68E-7818900No hitNo description
PROSITE profilePS5174522.281825909IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MEFELDWIIS DERLDNKWNN ENCWIFEESD RVPYIIQIEE DRPCSLKMDD IYHVHSCRFI  60
PTGSPCATKI AHYFLIHCKM RLSSAGFSPQ PQEGEKRVLN SELWHACAGP LVCLPAVGSR  120
VVYFPQGHSE QVTASTNMEV DSHIPNHPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP  180
LNPQEQKDGY LPAGLGSPNK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFSQQ  240
PPAQELIARD LHDNEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL  300
LLGIRRANRP QTVMPSSVLS SDSMHLGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA  360
KYIKAVYHTH ISVGMRFRML FETEESSVRR YMGTITGISD LDAARWPNSH WRSVKVGWDE  420
STAGERQPRV SLWEIEPLTT FPMYPSSFPL RLKRPWPPGL PSYNGLREDD HNMNSPLLWL  480
RGDTGDRGIQ SLNYHGIGVT PWMQPRFDAS MIGLQTDMYQ AMAAAALQEM RGVDPSKLLP  540
TSLLQFQQTQ NLSSRSAALM QPQMVQESQS QQAFLQGVEE IRQSYSQTPT QSHLQHQLQH  600
QNSFSNQQQQ ILDHQQIPSA ISSMNQFASA SQSRSPSFQV ITSPCQQQSF PDSNGNSATS  660
TTLSPLSSLM GSFSQDESSN LLNVPRTNPL LSSSGWPSKR AAIEPLLSSG VPQCVLPQVE  720
QLGPPQTTIS HSPISLPPFP GRECSIDQEG STDPQTHLLF GINMSNLRAV GSDSVSTTIH  780
FPSNYMSTTE TDFSLNPAVT PSNCIDESGF LQSPENVGHE NQPNGNFVKV YKSGSYGRSL  840
DITKFSSYHE LRRELARMFG LDGELEDPVR SGWQLVFVDR ENDVLLLGDD PWPEFVNSVW  900
CIKILSPQEV QQMGKRGLEL LKSVPMQRLS SNSCDDYGGS RQDSRNLSSG ITSVGSLDTV  960
EFLSKLRKGR KRGKVIVKHS PWTHGVNTNT GENGMEAYGV SIAWCHWCGL SVVWMDMWLF  1020
EGWNGDKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1589243643388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30394.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293501.10.0PREDICTED: auxin response factor 6
SwissprotA2YG670.0ARFQ_ORYSI; Auxin response factor 17
TrEMBLA0A2P6Q5V30.0A0A2P6Q5V3_ROSCH; Auxin response factor
STRINGXP_004293501.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6