PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30567.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20545.6 Da    PI: 10.1686
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30567.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.27.8e-221053245
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             r+ ++  rqvtfskRr+g++KKA+E+ +LC+aeva+++fs+ gk
  mrna30567.1-v1.0-hybrid 10 RVMDNNSRQVTFSKRRTGLFKKAHEIATLCGAEVAIVVFSPGGK 53
                             6778889**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.76E-29172IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.109161IPR002100Transcription factor, MADS-box
SMARTSM004327.2E-36160IPR002100Transcription factor, MADS-box
CDDcd002652.25E-35275No hitNo description
PRINTSPR004041.4E-21323IPR002100Transcription factor, MADS-box
PfamPF003198.7E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGRRKIEMKR VMDNNSRQVT FSKRRTGLFK KAHEIATLCG AEVAIVVFSP GGKPFSFGHP  60
NVDSVADRFL NREEDEDNTD DRGVRRSGKV VERLNQQVDD LVKKLKAEKK KGEVLDRALL  120
KAKTKWEVLI QEMSELVEAK QSLEDLRESV MARVSDMEAS SSLLLLANKP MKETEKNVAK  180
SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19197191MEF2C
5f28_B2e-19197191MEF2C
5f28_C2e-19197191MEF2C
5f28_D2e-19197191MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30567.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460177.11e-129PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P6Q5E61e-101A0A2P6Q5E6_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004294548.11e-106(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-38AGAMOUS-like 29