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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
mrna30958.1-v1.0-hybrid |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family |
GRAS |
| Protein Properties |
Length: 545aa MW: 59639.5 Da PI: 5.106 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| mrna30958.1-v1.0-hybrid | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 430.2 | 1.7e-131 | 157 | 519 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84
lv+lL++cAe v+ gdl+la +++++++ l + ++g + ++a yf AL++r++ ++ +++ + e+ +++f
mrna30958.1-v1.0-hybrid 157 LVQLLVTCAESVQRGDLALAGSIIETMQALltRVNTGCGIGKVAGYFIDALSRRVFT--------PQSVTSDGGSAHENELLYHYF 234
689**************************977888899******************9........2333333334666678899** PP
GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
+e++P+lkf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A+
mrna30958.1-v1.0-hybrid 235 YEACPYLKFAHFTANQAILEAFHGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELAR 320
************************************************************************************** PP
GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
+++v+f f+ ++a+rled+++++L+v+p+Ea+aVn+++qlhrll +s + +++ +L +++l+Pk+v+vveqeadhn++ Fler
mrna30958.1-v1.0-hybrid 321 SVNVRFAFRGVAASRLEDVKPWMLQVSPKEAVAVNSIMQLHRLL---GSDSTRIEMMLGWIRNLNPKIVTVVEQEADHNKPGFLER 403
********************************************...444555569****************************** PP
GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
f+eal+yys +fdslea + + ++++ +++++rei+nvv+ceg +r+erhe l+kWr rle+aGF+p++l+++a+kqa++ll
mrna30958.1-v1.0-hybrid 404 FTEALYYYSNMFDSLEAC--GAMQPDKTLAEMYIQREICNVVCCEGVARVERHEPLAKWRTRLEQAGFRPLHLGSNAYKQASMLLT 487
***************998..4567788888899***************************************************** PP
GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++ +gyrvee++g+l++gW++rpL+++SaW+
mrna30958.1-v1.0-hybrid 488 LFSAEGYRVEEKEGCLTIGWHSRPLIAASAWQ 519
*******************************6 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006808 | Biological Process | regulation of nitrogen utilization |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009863 | Biological Process | salicylic acid mediated signaling pathway |
| GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0010187 | Biological Process | negative regulation of seed germination |
| GO:0010218 | Biological Process | response to far red light |
| GO:0010233 | Biological Process | phloem transport |
| GO:0042538 | Biological Process | hyperosmotic salinity response |
| GO:2000033 | Biological Process | regulation of seed dormancy process |
| GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| Sequence ? help Back to Top |
| Protein Sequence Length: 545 aa
Download sequence Send
to blast |
MEPYNSGGGV SSSSSASSSS SSSATSITQP QEMDGYLAEA GYNVRSSDLR HVAQRLERLE 60
NVMVNSHDDL AQFASDAVIY NPSDMASWVD SLLSASDFNA PDLDFADAIM TDPTAAFPAD 120
TWSDIPPPIS TAAPPPMQNH QQITSFTAME EDSGIRLVQL LVTCAESVQR GDLALAGSII 180
ETMQALLTRV NTGCGIGKVA GYFIDALSRR VFTPQSVTSD GGSAHENELL YHYFYEACPY 240
LKFAHFTANQ AILEAFHGHD CVHVIDFNLM HGLQWPALIQ ALALRPGGPP LLRLTGIGPP 300
SPDGRDSLRE IGLRLAELAR SVNVRFAFRG VAASRLEDVK PWMLQVSPKE AVAVNSIMQL 360
HRLLGSDSTR IEMMLGWIRN LNPKIVTVVE QEADHNKPGF LERFTEALYY YSNMFDSLEA 420
CGAMQPDKTL AEMYIQREIC NVVCCEGVAR VERHEPLAKW RTRLEQAGFR PLHLGSNAYK 480
QASMLLTLFS AEGYRVEEKE GCLTIGWHSR PLIAASAWQV MPLPEPTATA TNPLGIVNHS 540
ANHV*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}. |
