PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31407.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 165aa    MW: 19126.6 Da    PI: 8.2518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31407.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-17552148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd ll ++++++G g+W++++   g++R++k+c+ rw++yl
  mrna31407.1-v1.0-hybrid  5 KGSWTKEEDHLLRNYIEKHGEGRWHKVPLQAGLNRCRKSCRMRWLNYL 52
                             799*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.787156IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-23255IPR009057Homeodomain-like
SMARTSM007176.5E-14454IPR001005SANT/Myb domain
PfamPF002492.3E-16552IPR001005SANT/Myb domain
SuperFamilySSF466895.07E-21680IPR009057Homeodomain-like
CDDcd001676.32E-10752No hitNo description
Gene3DG3DSA:1.10.10.601.2E-45679IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEVRKGSWTK EEDHLLRNYI EKHGEGRWHK VPLQAGLNRC RKSCRMRWLN YLKPNIKRGD  60
FEEDEVDLMI RLRKLLGNRQ VGEAAGGRAS VGVEARPHRR RNSSSSTSPP MENGIDDWKT  120
LLHEDVLTNF WVEDTASMSS IGVNSTEKGF EMDLWQFLQE ETRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-1129424117MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31407.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1551653e-51EU155165.1 Rubus idaeus R2R3 MYB transcription factor (MYB10) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024180245.17e-73transcription factor MYB114-like
TrEMBLA0A346MMU93e-82A0A346MMU9_ROSRU; MYB113 protein
STRINGXP_004304847.13e-92(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-37myb domain protein 113