PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31678.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 214aa    MW: 24100.2 Da    PI: 9.2131
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31678.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068142167123
                              EEET..TTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                              +kCp  +C+  F  + n krHi   H
  mrna31678.1-v1.0-hybrid 142 FKCPieNCKSEFAFQGNVKRHIVEfH 167
                              89*******************98777 PP
2zf-C2H211.80.00076182202119
                              EEET..TTTEEESSHHHHHHH CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrH 19 
                              ++C+   Cgk+F   s L++H
  mrna31678.1-v1.0-hybrid 182 HVCQepGCGKVFQFASKLRKH 202
                              689999*************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.39E-51742No hitNo description
PROSITE profilePS501578.6211947IPR007087Zinc finger, C2H2
SMARTSM00355321942IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4139164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.6E-5140168No hitNo description
SMARTSM003550.96142167IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.053142172IPR007087Zinc finger, C2H2
PROSITE patternPS000280144167IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-7177206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.39E-5177206No hitNo description
SMARTSM003550.5182206IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411182206IPR007087Zinc finger, C2H2
PROSITE patternPS000280184206IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVQGEAEETR PIFRDIRRYY CKNCGICRSK KTLIASHMLA QHKALDPTKE LQNARGYGLK  60
WTSTRGETSC EAPSSDPQSR RVTIEREVLD PKQRNPKCET VRLEWTSTRG ETSCEAPSSD  120
PQSHTKKGSF EPSSSSAPRK AFKCPIENCK SEFAFQGNVK RHIVEFHSED RPSTSVEGQK  180
EHVCQEPGCG KVFQFASKLR KHDGSHGRVL FLK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31678.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287098.11e-71PREDICTED: transcription factor IIIA-like isoform X1
STRINGXP_004287098.14e-71(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-19transcription factor IIIA