PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31749.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 1011aa    MW: 112544 Da    PI: 6.9237
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31749.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3273.6e-10064610092374
                     GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85  
                                ++L+++Ae+v +g+++ aqa+Larl+++ sp g+p+qR+a+yf+eAL+  l+ + + +  + pp++ ++ +++ ++ a+k+fs
  mrna31749.1-v1.0-hybrid  646 LDQLYKAAEMVGTGNFSHAQAILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPAT--SPPPRTPTPFDVIFKMGAYKVFS 727 
                               679**************************************************955554..57888999999************ PP

                     GRAS   86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLak 167 
                               evsP+++f ++t+Nqa+leav++++++Hi+Dfdi+ G++W++++q+L  R+  + +psl+iT+++sp+++++ el+ ++++L++
  mrna31749.1-v1.0-hybrid  728 EVSPLIQFVNFTCNQALLEAVSEADQIHIVDFDIGFGAHWASFMQELPLRNrgGTSPSLKITAFASPSTHHTVELSLMRDNLTQ 811 
                               ************************************************99976779**************************** PP

                     GRAS  168 fAeelgvpfefnvlvakrledleleeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248 
                               fA+e+g+ fe +v+  + l d +  +L   r + +Ea+aVn+ +   +  +++++l++    +L++vk+lsPk+vv  ++ +d+
  mrna31749.1-v1.0-hybrid  812 FADEIGIGFELEVVNID-LLDQNSYSLpffRANDNEAVAVNFPI--WSSSNQPAALPN----LLRFVKQLSPKIVVSLDRGCDR 888 
                               *************7444.4444455552226666********99..555667888888....********************** PP

                     GRAS  249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 
                               ++ +F +++l+al+ y  l++sl+a    +s++ +k+Er+ll+++i++ v  + +       ++  W+  + +aGF+p+++s++
  mrna31749.1-v1.0-hybrid  889 SDLPFPQHILQALQSYINLLESLDAV-NVTSDAVNKIERFLLQPKIESTVLGRLRT----PDKMPLWKTLFASAGFTPLSFSNF 967 
                               ***********************665.579********************998887....9999******************** PP

                     GRAS  333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 
                               +++qa++++++   +g++ve++++slvl+W++r+L+s+SaWr
  mrna31749.1-v1.0-hybrid  968 TETQAECVVKRSTARGFHVEKRQESLVLCWQRRELISASAWR 1009
                               *****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.814619989IPR005202Transcription factor GRAS
PfamPF035141.2E-976461009IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1011 aa     Download sequence    Send to blast
MTAEMESMLE VDIGWLTEKD DDRLYMQRRN KDDVDIDIDS DREAPEYRRN KRLMVFELVE  60
VGLNHSLGLR RLRLWSCVRL SPAPFWPMST LNRWPQSPET LPNRRDSHRP FSFLVADHQG  120
EKGTPTEARK PYFYIKRQSA RFTSRIGGRV QSTLCEGTKG GREEIRTRNT TTTRTFNKNN  180
IKLERDGAAM KLWKAFRFDV DGMQRVAAGC EFERFRKQRR DLELCKSGDP FVQQTNQQGK  240
GVLEIIAPSI CDWNHKKEEE LFINNSFVSN EPTSVLHMRR SPSPPTSAST LSSSFNGGGG  300
GNTTPLLQET SPVGPEPDTA AARSSKDEWA CELQSIPSGG LEAVTGSGGE RCGGLGLEDW  360
ETMLSETAAS PGQDHSLLRW ISGDVDDASF GLKQLLQSGN NSHSLELDGN VGLGIVDQGS  420
GFDHIGSSVS GPNLGFSGGT GFNGGNGRLG FVSGTSGPLN YKVSNVGMVN NNGASSNPIF  480
TNSTLPVSLP HGMVYQNHQQ FENPDEKPQI LNPQLYMNQH QSQLPHQNPN FFMPVTYAQQ  540
EQHFLQSQPK RHNPGGGGGL DPSSQIHQKV QYSDPGHEFL LRKQHLQQQP QPHFGNFPPG  600
MQFLPQQHHT QPRPVVVPKQ KVDGEEMAAA VAHQNQQQQL LQHSLLDQLY KAAEMVGTGN  660
FSHAQAILAR LNHQLSPVGK PLQRAAFYFK EALQLLLLMN NPATSPPPRT PTPFDVIFKM  720
GAYKVFSEVS PLIQFVNFTC NQALLEAVSE ADQIHIVDFD IGFGAHWASF MQELPLRNRG  780
GTSPSLKITA FASPSTHHTV ELSLMRDNLT QFADEIGIGF ELEVVNIDLL DQNSYSLPFF  840
RANDNEAVAV NFPIWSSSNQ PAALPNLLRF VKQLSPKIVV SLDRGCDRSD LPFPQHILQA  900
LQSYINLLES LDAVNVTSDA VNKIERFLLQ PKIESTVLGR LRTPDKMPLW KTLFASAGFT  960
PLSFSNFTET QAECVVKRST ARGFHVEKRQ ESLVLCWQRR ELISASAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-30664100922375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31749.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298643.10.0PREDICTED: scarecrow-like protein 6
TrEMBLA0A2P6P8C70.0A0A2P6P8C7_ROSCH; Putative transcription factor GRAS family
STRINGXP_004298643.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132692130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-114GRAS family protein