PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31798.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 170aa    MW: 20070.9 Da    PI: 9.7165
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31798.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.41.5e-19111411128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvka....eekewyfFskrdkkyatgkrknratksg 81 
                              +p+Gfr +Pt+eel+++yL++k++g +l+   v +++++y k ePwd+ ++++     e+ke+yfF  + ++  + +  +r +++g
  mrna31798.1-v1.0-hybrid  11 VPVGFRSKPTEEELLCYYLRRKIRGLRLPQGVVHHNCNVYgKKEPWDIWEAYRDpsdpETKELYFFRDEPRRVFSCSTIRR-VDTG 95 
                              599************************9996667888999456*****743333344477799******999987776666.588* PP

                      NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               W+     k+v++  +++++g ++t+v+ +  + + +   W+++e +l
  mrna31798.1-v1.0-hybrid  96 NWRGENLRKKVHAYgSDRVIGWRRTFVYTN--RDSVQDGCWLINELEL 141
                              ******9999999867788*********94..4444689999999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-235160IPR003441NAC domain
PROSITE profilePS5100525.8811163IPR003441NAC domain
PfamPF023652.7E-1412140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAVPMQGVNH VPVGFRSKPT EEELLCYYLR RKIRGLRLPQ GVVHHNCNVY GKKEPWDIWE  60
AYRDPSDPET KELYFFRDEP RRVFSCSTIR RVDTGNWRGE NLRKKVHAYG SDRVIGWRRT  120
FVYTNRDSVQ DGCWLINELE LHESLFPSKD KRNSYVLCIL TKIDKKGKH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31798.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300917.11e-124PREDICTED: NAC domain-containing protein 43-like
STRINGXP_004300917.11e-124(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.13e-17NAC family protein