PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31907.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 197aa    MW: 22174.3 Da    PI: 8.1223
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31907.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-151201941697
                              EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                              l++p +f ++h  +   ++   ++ ++g++W+vk+   +   ++ l++GW +F +an++k gD+++Fkl++r  ++lvv+v+
  mrna31907.1-v1.0-hybrid 120 LRVPADFSRKHLTQ---GTYNLVKRSKGQKWKVKV--VRLCTSVKLSGGWAKFRRANQVKCGDICTFKLVER--KTLVVHVV 194
                              8899****999433...333456789*********..999999*************************9875..55588886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.882153IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-61656IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-61853IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-16103194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-17103194IPR015300DNA-binding pseudobarrel domain
CDDcd100175.77E-12107193No hitNo description
SMARTSM010191.9E-6109196IPR003340B3 DNA binding domain
PROSITE profilePS5086311.603120196IPR003340B3 DNA binding domain
PfamPF023622.1E-13120194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MATFCTLLSP GISNEILEGW REFLEDHSIG DGELLIVRYD GRMQFSIQIF DKNHIERIDF  60
PDTEIQDENL AFANDSASVG NIPSCQSSEF KEINKGEAAA FTNSEFPSFT VTIPDYCYGL  120
RVPADFSRKH LTQGTYNLVK RSKGQKWKVK VVRLCTSVKL SGGWAKFRRA NQVKCGDICT  180
FKLVERKTLV VHVVPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31907.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292455.11e-137PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A2P6PMV82e-53A0A2P6PMV8_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004292455.11e-136(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3430622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-11B3 family protein