PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31908.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 203aa    MW: 22963.4 Da    PI: 9.2702
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31908.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.7e-181242001597
                              -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                              ++++p +f ++h   +++   +++++++g++W+vk+   ++  ++ l++GW eF +an++k gD+++Fkl++r  ++lvv+v+
  mrna31908.1-v1.0-hybrid 124 NVSVPTDFSKKHL--PQGYYSIVVKNSKGQKWKVKV--VRSCTSVKLSGGWAEFRRANQIKCGDICTFKLVER--KTLVVHVV 200
                              5899*****9994..235568***************..9******************************9875..55588886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-4557IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-19108200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-18108200IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.606110202IPR003340B3 DNA binding domain
CDDcd100171.95E-15112199No hitNo description
SMARTSM010192.8E-7114202IPR003340B3 DNA binding domain
PfamPF023624.9E-16123200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MQRRASKEPT FFKIIITGFN TDDLRIPPKF RRHMLNELSE TTTLELRGSS KCSWIVQGLT  60
IRKDLGEEQE STTIQVDAAV ENIRSCQSTE LVEIKEEEIE EEAATSHNSG FPSFASIMLN  120
HLYNVSVPTD FSKKHLPQGY YSIVVKNSKG QKWKVKVVRS CTSVKLSGGW AEFRRANQIK  180
CGDICTFKLV ERKTLVVHVV PK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31908.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290347.11e-113PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A2P6PMZ67e-53A0A2P6PMZ6_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004290347.11e-112(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.14e-11B3 family protein