PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna31920.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 549aa MW: 62677.8 Da PI: 9.4198

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna31920.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.4	8.4e-22	26	111	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Yn+YA + GFsvrks+ ++ + n+ i r+fvCsk +++e++ e +++++ etr+ Cka++ + + dg w + +++++HnH mrna31920.1-v1.0-hybrid 26 LYNTYALRKGFSVRKSHIRRDTSNN-IRLREFVCSKAEFAQEQDVF-EPTKHKKLETRVACKAMISFSVK-DGIWTIPHINSDHNH 108 7**************99995555.************9999.9*****************9.************* PP FAR1 88 ela 90 ela mrna31920.1-v1.0-hybrid 109 ELA 111 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-19	26	111	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.6E-15	150	213	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MEEIIEDDEE LKVGTQVHSD EEAYNLYNTY ALRKGFSVRK SHIRRDTSNN IRLREFVCSK 60 AEFAQEQDVF EPTKHKKLET RVACKAMISF SVKDGIWTIP HINSDHNHEL AKPEERQFLR 120 SGRKVTDACG QVFTSMKDAR RGETKAFFYI ANEVYNYLQK KRMKWWKQSF LESMGNKAPK 180 SIFTDEDKAM AKAVKIVFPG ASHRLCTWHI GKNAGKKIGS YLGNPEFKKQ FNHCLHGCSS 240 EIEFPVSWDN LIGISTHTME LIKFVHHYEK KIEETRLTEL EDDYRSKNGA HRPKVWTKML 300 SSAAKVFDIN NITTLPTQYV LKRWTKETKK GVVVNSDTSG GTSENLKTAR VLHLSELMHE 360 GNNVYDIASL TSSSTKIVKD LLTEAMKRLE KDKDTLYMLE NLKNFGAESG CSISGNETLV 420 LNPPNAKTKG IKNNRIKDVI ETNQRKKRTK EQENQENNDP KAPTDVSTFN NNQFGVPDTP 480 TFSNQFGVPN TPFYNQRMLS WPFGHPHSYV SYGQMPFSNQ NSNYSTTRLN LAPTATLTTD 540 PTLSQQPQ*

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MEEIIEDDEE LKVGTQVHSD EEAYNLYNTY ALRKGFSVRK SHIRRDTSNN IRLREFVCSK  60
AEFAQEQDVF EPTKHKKLET RVACKAMISF SVKDGIWTIP HINSDHNHEL AKPEERQFLR  120
SGRKVTDACG QVFTSMKDAR RGETKAFFYI ANEVYNYLQK KRMKWWKQSF LESMGNKAPK  180
SIFTDEDKAM AKAVKIVFPG ASHRLCTWHI GKNAGKKIGS YLGNPEFKKQ FNHCLHGCSS  240
EIEFPVSWDN LIGISTHTME LIKFVHHYEK KIEETRLTEL EDDYRSKNGA HRPKVWTKML  300
SSAAKVFDIN NITTLPTQYV LKRWTKETKK GVVVNSDTSG GTSENLKTAR VLHLSELMHE  360
GNNVYDIASL TSSSTKIVKD LLTEAMKRLE KDKDTLYMLE NLKNFGAESG CSISGNETLV  420
LNPPNAKTKG IKNNRIKDVI ETNQRKKRTK EQENQENNDP KAPTDVSTFN NNQFGVPDTP  480
TFSNQFGVPN TPFYNQRMLS WPFGHPHSYV SYGQMPFSNQ NSNYSTTRLN LAPTATLTTD  540
PTLSQQPQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna31920.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024188144.1	1e-152	protein FAR1-RELATED SEQUENCE 4-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3607	9	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-13	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	mrna31920.1-v1.0-hybrid