PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32155.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25677.5 Da    PI: 9.1123
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32155.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.93.1e-1910461551
                             HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             kR +++lKKA+ELS+LCdaevavi f s+gkl+eyss
  mrna32155.1-v1.0-hybrid 10 KRHATLLKKAQELSILCDAEVAVIAFTSDGKLHEYSS 46
                             9**********************************96 PP
2K-box21.31.2e-0879166793
                    K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe.en 91 
                              +  +e++ +s+++ l  Lk +   L+  + ++ G+ L+ Ls +eL  Leq+ + +l ++ +kK+ell++ +e+  +   + +e e+
  mrna32155.1-v1.0-hybrid  79 TVSNEEHPKSSDEVLHALKGQHAALKLDKLRRTGKALDGLSREELYALEQEQKGALVSVLKKKEELLVRLLEKKEELLVRSKErEH 164
                              44566777778888899*********999**************************************9988876544333332033 PP

                    K-box  92 ka 93 
                              +a
  mrna32155.1-v1.0-hybrid 165 QA 166
                              33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-6747IPR002100Transcription factor, MADS-box
PfamPF003198.8E-15944IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-18967IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.3571048IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-131025IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-132546IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.73986184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPETEILGKK RHATLLKKAQ ELSILCDAEV AVIAFTSDGK LHEYSSKRVE HTLSRYKNYT  60
GRRTKMEPDH QLEERRRGTV SNEEHPKSSD EVLHALKGQH AALKLDKLRR TGKALDGLSR  120
EELYALEQEQ KGALVSVLKK KEELLVRLLE KKEELLVRSK EREHQAIQEK EILMRRGFEE  180
RTKEIPCLQL FPENSTGLCT SSKAVALSSS PAQDMDIDIL RLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32155.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300888.11e-160PREDICTED: truncated transcription factor CAULIFLOWER A-like
TrEMBLA0A2P6QDU03e-94A0A2P6QDU0_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004300888.11e-159(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3250322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.14e-17AGAMOUS-like 15