PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32171.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 188aa    MW: 21159.5 Da    PI: 10.0145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32171.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-091566654
                             HHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-.STCHHHHHHHHHHHHHH CS
                      HLH  6 nerErrRRdriNsafeeLrellPk.as.kapskK.lsKaeiLekAveYIksL 54
                             + +Er+RR +++   ++L +++P+  + + +sk  ++  + L +A  YIk+L
  mrna32171.1-v1.0-hybrid 15 KTVERNRRIQMKGLCFKLASMVPPqYFkSSKSKEmMTQQSQLDLAASYIKQL 66
                             679*********************55586677778****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.33E-5771No hitNo description
PROSITE profilePS5088810.22966IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-101384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-91380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-61566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKKCTSETSS KLDRKTVERN RRIQMKGLCF KLASMVPPQY FKSSKSKEMM TQQSQLDLAA  60
SYIKQLTERI ENLKERKEKE LKSQSGTSNK SSITNVDRAN NKAVVVGSRL PIIKMSESGP  120
SIEVMLISGL NKNFMFYEVI SVLQEEGAEV VSANFSTVGD KIFHTLHAQV TDYYFFALLK  180
LFPSPDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32171.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298935.11e-121PREDICTED: transcription factor bHLH100-like
TrEMBLA0A2P6P5W21e-107A0A2P6P5W2_ROSCH; Putative transcription factor bHLH family
STRINGXP_004298935.11e-121(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-27bHLH family protein