PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32606.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 560aa    MW: 62566.6 Da    PI: 7.9833
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32606.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.4e-124180546
                             -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                              ++E++l+++ +k+ G++ W++Ia +++ gRt++++k++w +
  mrna32606.1-v1.0-hybrid 41 REDEEDLIIRMHKLVGKR-WSLIAGRIP-GRTDNEIKNYWIS 80
                             589***************.*********.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.006131IPR017877Myb-like domain
SuperFamilySSF466892.52E-171387IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-101443IPR009057Homeodomain-like
PROSITE profilePS5129422.1733286IPR017930Myb domain
SMARTSM007174.0E-123684IPR001005SANT/Myb domain
CDDcd001675.60E-94282No hitNo description
PfamPF002491.2E-104280IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-174482IPR009057Homeodomain-like
SuperFamilySSF531873.52E-9489527No hitNo description
Gene3DG3DSA:3.40.630.102.1E-12491527No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MVWYQILKDY VKNHGLGRCG KSVRLRWLNY LRPDIKHGNI REDEEDLIIR MHKLVGKRWS  60
LIAGRIPGRT DNEIKNYWIS TLSKKLAEEK RKKPEVPRNE IAKESLPSPI EVDDGHPHPT  120
ICNEVPGGGG GLMCFASNVN VEEDHQHQSS DTDNSTTMSA RVGVRIRGVA NNVQPTGDDL  180
SDDAMPWNDW IMDLNEGQLD LSEFLQTDFS NFWEESDMFM NFEVGGCSTI NHDVNIRVLV  240
TLLLWCFSDD RGWLFDIVDR ESLSTVVVVI GRRGFRFSSD RWRYKTVLNW RRRVCTGGGF  300
ALAVASSVKS CRISRGRRRR LLRSTLIAHL FPALPCSSSQ KVLSSLLELA HLFHALPCSS  360
SQKVLFSLLE LAEGTLFPAR ARPSLPCSSL LELAHLFTDF FDAFCGFVNW VPEGSEAQAH  420
LMIKKLRKAV SFTVIGLIGY GRGTVEFTIE KGDSSTFAPE AGGEPRKTAS IQVVIDSYSA  480
PLTAGECGVG EHKSKVAGKM HGCGHDGHVA MLLGAASLLQ EYRHKLQIWK VPAYERGGEV  540
REIIRPWGCL QWAPGLAVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-17118633108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32606.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2574423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.14e-36myb domain protein 66