PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna34104.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 108aa MW: 12195.3 Da PI: 4.0892

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna34104.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.3	4.3e-07	64	105	1	43
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43 k+Y++Y+k +GF+v+k++s++ ++ge + tf+Cs+ k+++ mrna34104.1-v1.0-hybrid 64 KYYKSYGKGIGFEVCKRTSSRG-DDGELKYITFTCSRFDKPNS 105 69*************99998.9999*******9877765 PP

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MEENVENEMD VAYEEEDINC GNEVISASSH VEESIDTIES ENVKERVKET EIGLVFDSID 60 ELEKYYKSYG KGIGFEVCKR TSSRGDDGEL KYITFTCSRF DKPNSKS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna34104.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024161868.1	9e-39	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A251N4Z4	7e-19	A0A251N4Z4_PRUPE; Uncharacterized protein
TrEMBL	A0A2N9J8F9	2e-17	A0A2N9J8F9_FAGSY; Uncharacterized protein
TrEMBL	M5VVB7	6e-18	M5VVB7_PRUPE; Uncharacterized protein
STRING	EMJ05339	1e-18	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13793	7	17

Link Out ? help Back to Top
Phytozome	mrna34104.1-v1.0-hybrid