PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna34213.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 209aa    MW: 23564.3 Da    PI: 8.0763
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna34213.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.82.4e-2056146190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                              +fY +Y+  vGF +rks + +s  ng i +r++vC+keg+r+ +k+    e++r  r etrt C akl++  ++ +++++v+ +  
  mrna34213.1-v1.0-hybrid  56 SFYAAYSVAVGFGIRKSDKGES--NGLIRRREWVCNKEGTRKANKSLeqGESSRYARRETRTLCGAKLRIGYSEaTKVYVVKAFIP 139
                              5****************99998..9****************999877546677779****************999*********** PP

                     FAR1  84 eHnHela 90 
                              +HnH la
  mrna34213.1-v1.0-hybrid 140 QHNHMLA 146
                              ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1756146IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDASRNEEQP TMDPLENEEQ PSSGFEDVKV HVPRHGSFSV SDIEAMTSNT VDEAESFYAA  60
YSVAVGFGIR KSDKGESNGL IRRREWVCNK EGTRKANKSL EQGESSRYAR RETRTLCGAK  120
LRIGYSEATK VYVVKAFIPQ HNHMLATSNQ IPFIRTNRHV GEESLALTNT MTRVSIRPCH  180
AYEYMVEQSG GYRRVGFTVK DLYNKIDQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna34213.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457288.11e-156PREDICTED: uncharacterized protein LOC105349381
STRINGXP_004292074.11e-80(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1575949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-17FAR1-related sequence 5