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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | mrna34277.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 173aa MW: 19630.7 Da PI: 7.164 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 31.4 | 6.2e-10 | 54 | 110 | 1 | 60 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrt 60
k+Y +Y+ + GF+v++++s+k+ ++ +t+ ++ Cskeg+r+ ++++ +++ +++++r+
mrna34277.1-v1.0-hybrid 54 KYYMNYGGKNGFNVKIRNSRKN-SEDFVTWVHYACSKEGFRDVKRHT--NASYSQPVSRC 110
69*****************999.5556**************998877..66666666666 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 6.8E-7 | 54 | 108 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 173 aa Download sequence Send to blast |
MDNADCTNLG NQPTCDSKDL KGEEEQFEHS HHNEEAIEEV ILGKEFLDVN SAKKYYMNYG 60 GKNGFNVKIR NSRKNSEDFV TWVHYACSKE GFRDVKRHTN ASYSQPVSRC GWAFLKCSQL 120 SIGSPERSLS QHVKAGSWLV DEDDDWIHSR QRTGTRSMSP KRSSDPLLPT KL* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna34277.1-v1.0-hybrid |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011460719.1 | 6e-82 | PREDICTED: uncharacterized protein LOC105350414 | ||||
| STRING | XP_004309633.1 | 1e-69 | (Fragaria vesca) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G07500.1 | 4e-06 | FAR1 family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | mrna34277.1-v1.0-hybrid |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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