 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | mrna34500.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
| Family | FAR1 | ||||||||
| Protein Properties | Length: 131aa MW: 14579.5 Da PI: 5.3138 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 25.4 | 4.7e-08 | 68 | 122 | 1 | 56 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtra 56
+fY++Y+ vGF rk+ + +s ng i +r++vC ke +r+++ + + +r++r+
mrna34500.1-v1.0-hybrid 68 RFYCAYSAAVGFGCRKDDKGES--NGLIRWRQWVCCKEETRDKKYLEaDGLSRTPRK 122
5****************99998..9*************9999987764233333343 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 6.7E-6 | 68 | 125 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 131 aa Download sequence Send to blast |
MLRRIVGVAI ASDEFLINKV QPAMDASENE KQPNKGVDDV AVDVPGFGSL TIADVRALTF 60 ETVDEAERFY CAYSAAVGFG CRKDDKGESN GLIRWRQWVC CKEETRDKKY LEADGLSRTP 120 RKQTRSIIMN * |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna34500.1-v1.0-hybrid |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004298058.1 | 1e-71 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
| STRING | XP_004298058.1 | 4e-71 | (Fragaria vesca) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF13896 | 2 | 8 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | mrna34500.1-v1.0-hybrid |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|