PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna34728.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 85aa    MW: 10002.3 Da    PI: 10.1087
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna34728.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.81.3e-112682265
                     FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkak 65
                             fY++YAke+ F+v++  s+k+  ng i+++++ Cskeg+++ ++kk     r+r++tr +Cka+
  mrna34728.1-v1.0-hybrid 26 FYKSYAKEARFNVKNFVSEKK--NGVIVRKEYACSKEGTSKVTRKK-----RNRNQTRENCKAR 82
                             **************9998887..9***************9998777.....999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-72682IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MTYEELADMI PIKNQEFQTL QDVETFYKSY AKEARFNVKN FVSEKKNGVI VRKEYACSKE  60
GTSKVTRKKR NRNQTRENCK ARQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna34728.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468636.16e-25PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2P6QU811e-33A0A2P6QU81_ROSCH; Putative transcription factor FAR family
STRINGXP_004292126.12e-39(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-08FAR1-related sequence 5