PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna34923.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 193aa    MW: 22170.2 Da    PI: 9.3622
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna34923.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.49.7e-1829118190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                              +fY++Y+  v F   k+ + +s  ng i +r++vC ke +r+++  + +  +r++r++tr++C+a+++++ ++ + +++v+ ++le
  mrna34923.1-v1.0-hybrid  29 RFYSTYSAAVRFGCMKDGKGES--NGLIRWRQWVCCKERSRDKKYLEaDGLSRTPRKQTRVNCQARFRINYNDgSRVYMVKIFVLE 112
                              5****************99988..9****************9998775677899*******************99*********** PP

                     FAR1  85 HnHela 90 
                              HnHela
  mrna34923.1-v1.0-hybrid 113 HNHELA 118
                              ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.8E-1529118IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAVDVPGFRS LTIADVRALT FEIVDEAERF YSTYSAAVRF GCMKDGKGES NGLIRWRQWV  60
CCKERSRDKK YLEADGLSRT PRKQTRVNCQ ARFRINYNDG SRVYMVKIFV LEHNHELATG  120
NQIAFVRAHR HVSDAALALT NTMTRVSIRP CHTYEYMVEQ AGGYSVVGFT MKDLYNKLDQ  180
QRWTSLFESD SK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna34923.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308570.11e-114PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_004297887.11e-144(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1575949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-21FAR1-related sequence 5