PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna35012.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 64aa    MW: 7325.26 Da    PI: 7.5143
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna35012.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.84.6e-15858151
                      NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkv 51
                             lp+G+rF+P+de l+++yL+kk ++++ e++ vi+e+d++k+eP+dLp ++
  mrna35012.1-v1.0-hybrid  8 LPKGCRFQPSDEVLLSHYLQKKNQRQDPEITAVIPEIDVTKHEPRDLPGEY 58
                             799***************************999**************9544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-14358IPR003441NAC domain
PROSITE profilePS5100516.68863IPR003441NAC domain
PfamPF023652.0E-5935IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MSYGGFSLPK GCRFQPSDEV LLSHYLQKKN QRQDPEITAV IPEIDVTKHE PRDLPGEYQR  60
RPQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna35012.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468877.12e-31PREDICTED: NAC domain-containing protein 4-like isoform X2
TrEMBLA0A2P6SIY73e-20A0A2P6SIY7_ROSCH; Putative transcription factor NAM family
STRINGXP_004308753.16e-26(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16106410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-12NAC 014