PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna35121.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 248aa MW: 28125.8 Da PI: 8.275

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna35121.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.6	3.1e-16	45	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fY++Y+ vGF rk+ + + ng i +r++vC keg+r ++ + + +r++r++tr++ +a ++++ ++ + +++v+ ++ e mrna35121.1-v1.0-hybrid 45 RFYCAYSAAVGFGCRKDDKGEA--NGLIRWRQWVCCKEGTRGKKYLEaDGLSRTPRKQTRVNFQAIFQINYNDgSRVYMVKIFVPE 128 5*************987776..9************9998774677899***************99******* PP FAR1 85 HnHela 90 HnHela mrna35121.1-v1.0-hybrid 129 HNHELA 134 **97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-14	45	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MDASETEKQP NKGVEDVAVD VLGFGCLMIA DVRALTFETV DEAERFYCAY SAAVGFGCRK 60 DDKGEANGLI RWRQWVCCKE GTRGKKYLEA DGLSRTPRKQ TRVNFQAIFQ INYNDGSRVY 120 MVKIFVPEHN HELATGNQIA FVRSHRHVSD AALALTNTMT RVSIRPCHTY EYMVEQAGGY 180 SVVGFTMKDL YNKLDQQRRT SPFESDSEGE LSYMSTGSKR PTLHMQIHYR FGRQVSGHFL 240 GRWAFIC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna35121.1-v1.0-hybrid

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004308570.1	1e-171	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004308570.1	1e-171	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15759	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-21	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	mrna35121.1-v1.0-hybrid