PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g000305m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 1697aa    MW: 185022 Da    PI: 5.5911
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g000305mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09723764346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +WT eE e++vd  + +G++ +++Ia+ ++  +t  +c+++++k
  orange1.1g000305m 723 PWTSEEREIFVDKLATFGKD-FRKIASFLN-YKTTADCVEFYYK 764
                        8*****************99.*********.9**********98 PP
2Myb_DNA-binding35.91.8e-11939979345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         WT eE  ++++av+ +G++ ++ Iar++  +R++ qck ++ 
  orange1.1g000305m 939 DWTDEEKSIFIQAVTSYGKD-FSMIARCIR-TRSRDQCKVFFS 979
                        6*****************99.*********.********8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-13707767IPR009057Homeodomain-like
PROSITE profilePS5129315.167719770IPR017884SANT domain
SMARTSM007172.4E-9720768IPR001005SANT/Myb domain
PfamPF002491.1E-6722764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-5723769IPR009057Homeodomain-like
PROSITE profilePS5129311.59935986IPR017884SANT domain
SMARTSM007171.6E-8936984IPR001005SANT/Myb domain
SuperFamilySSF466894.99E-11937986IPR009057Homeodomain-like
PfamPF002496.7E-8939979IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-7939980IPR009057Homeodomain-like
CDDcd001671.39E-7940978No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1697 aa     Download sequence    Send to blast
MPEDESTRIS VSRGDGKYGR NSRENRSSFC QSDCKGYAWD TSNGYATTPG RLHEVNCNQR  60
SVDDMLTYPS HPQSDFVTWD HLQLKDQHDN KIGSVNGLAT GQRCESENSL DWKKIKWTRS  120
GSLSSRGSGL SHSSSSKSMG GVDSSEGKTD FQVKNATSIQ SPSGDAATYA TSGVLFEETT  180
SRKKPRLGWG EGLAKYEKKK VEVPDVSGNK DGVFNFSSNA EPLQSLSSNL AEKSPRVMGF  240
SDCASPATPS SVACSSSPGV EEKAFGKAVS VDNDVSNLCG SPSIVSQNHR EGFLFNLEKL  300
DTNSIGNLGS SLVELLQYDD PSSVDSSFVR STAMNKLLVW KGDILKTLEM TETEIDSLEN  360
ELKSLKSVLG STSPCPVTSI SLSVEDNANP FNKQGTVSNS IIRPAPLQID CGDLSVENMP  420
DCSHGLEEVH GNSKDEDIDS PGTATSKFVE PSSFVKPVSP SNMLKNGESF GVLDTVHSSN  480
TEVKCTMPGS SFGEVVAGAS TCGDGDMILE SKNDALISSN FSAYADGENM LCDMILGANK  540
ELANEASEVL KKLLPRDHSN IDISGVANVF CCQNDSLVKE KFAKKKQLLR FKERVLTLKF  600
KAFQHLWRED LRLLSIRKYR ARSQKKCELS LRTTYTGYQK HRSSIRSRFS SPAGNLSLVQ  660
TAEVINFTSK LLSDSQIKTY RNSLKMPALI LDKKEKMSSR FISSNGLVED PCAVEKERAM  720
INPWTSEERE IFVDKLATFG KDFRKIASFL NYKTTADCVE FYYKNHKSDC FEKLKKKHDF  780
SKQGKTSTNT YLVTTGKRNR KMNAASLDIL GEASEIAAAA QVDGRQLISS GRISSGGRGD  840
SRTSLGDDGI IERSSSFDVI GGERETAAAD VLAGICGSLS SEAMSSCITS SVDPAEGQRD  900
WRRQKADSVM RLPSTSDVTQ NVDDDTCSDE SCGEMDPSDW TDEEKSIFIQ AVTSYGKDFS  960
MIARCIRTRS RDQCKVFFSK ARKCLGLDLI HTGRGNVGPS VNDDANGGGS DTEDACVLET  1020
SSVNCSDKLG SKTDEELPSH VIHSNQEESC SAGAKNLQTD LNKPEDDNGI TPLNDKDSEA  1080
VKPVNNDAFR TESRSFELES NNMNGMDNQS ESVLDQKNAV ELFKTAVRDK VAEQGAVSVS  1140
AGEESDPCPS SSNAVEETND VVAEASTEGF GNGLERYQPM LLENSLNDVR DKICNVDACG  1200
ESEIVQDSNT TGSAFDLYVD ASSHSVSSKL DSVDKPPLIS LPQWNSHPAA ASTQDSSVIQ  1260
CEKAFIQDRM SSTLEFQRSK DKSGHKSVVS DDYRQHLSVH SIVNHVESPQ ILNGYPLPIS  1320
TKKEMNGDIN CRQLSEVQSI SKSDRNIDEP YLAQDCYLRK CNSSMPHSSV TELPFLAENI  1380
EQTSDRRRAH SCSFSDTEKP SKNGDVKLFG KILSHPSSSQ KSAFSSHDNG ENGHHHKQSS  1440
KASNLKFTAH HPPDGGAALL KFDRNNYVGL ENGPARSYGF WDGSKIQTGF SSLPDSAILL  1500
AKYPAAFGGY PASSSKMEQQ SLQAAVVKSN ERHLNGVAVV PPREISSSNG VVDYQVYRSR  1560
EGNKVQPFSV DMKQRQEFLF AEMQXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXR  1620
NGFEALSSIQ QQGKGMVGVN VVGRGGILVG GGSCTGVSDP VAAIRMHYAK AEQYGGQGGS  1680
IIREEESWRG KGDIGR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.108111e-126flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485884.10.0uncharacterized protein LOC102608361 isoform X2
RefseqXP_024041490.10.0uncharacterized protein LOC18045636 isoform X2
TrEMBLA0A067E3L10.0A0A067E3L1_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006485882.10.0(Citrus sinensis)
STRINGXP_006436269.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.10.0MYB family protein