PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g001099m

Common Name

CISIN_1g001099mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 1159aa MW: 129565 Da PI: 8.2485

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g001099m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.4	2.5e-11	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk+Ia+ + +Rt++++ orange1.1g001099m 46 QWSKEELERFYEAYRKYGKD-WKKIAAAVR-NRTAEMV 81 6***************99.*****.*9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.109	42	95	IPR017884	SANT domain
SMART	SM00717	2.3E-6	43	91	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.48E-11	43	89	IPR009057	Homeodomain-like
Pfam	PF00249	9.6E-10	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-7	46	81	IPR009057	Homeodomain-like
CDD	cd00167	6.08E-8	47	81	No hit	No description
SMART	SM01135	1.2E-51	629	730	IPR033471	DIRP domain
Pfam	PF06584	5.1E-32	629	729	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1159 aa Download sequence Send to blast
MAPTRRSKSV NKRVAYTSEV ASKKKAENAD RSGKRKRKLS DMLGPQWSKE ELERFYEAYR 60 KYGKDWKKIA AAVRNRTAEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYGILAGSDG 120 EQESDEATGS SQKSQKCAGG KFQNPPPKGS DGPSPDLLNF QSAAPNYGCL SLLKKRRSGS 180 RPRAVAKRTP RVPVSYSYDK DNTEKYISPI KQGLKPRLGS IDDDVAHEIA LALTEASQRG 240 GSLLVSQTPK RKRGKPSPVQ KGSRTCDVSE MNSSKPHGSE MDEDGRELSL GSTDADNGYY 300 SRDKIYLMDA ETADTVEIQQ KGKRYHSKKL KQEESVSNHL DDIKEACSGT EEGQDMVVMK 360 GKFAMEIADE KNSRSYSKGS KKRSKKVLFK RDESSEFDAL QTLADLSLMM PETTADTELS 420 LQLKEEKPEA VNESKLKGNR SSTGVKDTAI KTSKLGKDCT DDVSVIPESE EGNHLTNSGN 480 RTKRQKFLPI KLRMDATEEL KKFISKGKRS LSASQSKHGK LVKPPEHTSS TDHEKEGNNS 540 ASSTAHVRTA NQVNLPTKVR SRRKMNMQKL LIERDKMSSE DILKSSEDIF NDQNRTNSSF 600 FDRAIKQKEQ LSNCLSWYQV RVWCVSEWFY STIDYPWFAK REFVEYLDHV GLSHVPRLTR 660 VEWGVIRSSL GRPRRFSEQF LKEEKEKLNQ YRESVRNHYS ELRSGTKEGL PTDLARPLYV 720 GQRIIAVHPR TREICDGSVL TVEHSRYRVQ FDKRELGIEF VQDIDCMPLN PLENMPASLT 780 RPNVAFGKFM DNFTELQMNG QPRERDIEGY MKFTPCENLE TAYAPSHISP STNYPINNLL 840 QQHKGVSYTD SEVHVGSTGQ AKEEDVLALS HLRHALDKKE AIVSELRCMN DEILENQKDG 900 DNSFKDSELF KKHYAAILLQ LNDINEQVAS ALFCLRQRNT YQGNTCLTGL KPMSGLGNLG 960 GGLPNSFDHS AYQTPESGPH VVEVVESSRS KAQKMVDVAV QALSSLEKEG NGIERIEEAM 1020 DYVNNKLAGN DSGMPSIRSS TSADLVHSSR NSQDQQLETH TTNLLANSRA PDSTLNNSSD 1080 ENSAHIPLEL IAHCVAALFM IQRCTERDFP PADVALVLDS AVTSLQPCCS QNLPVYAEIQ 1140 KCMGIIRNQI LALIPTST*

Sequence ? help Back to Top

Protein Sequence Length: 1159 aa Download sequence Send to blast

MAPTRRSKSV NKRVAYTSEV ASKKKAENAD RSGKRKRKLS DMLGPQWSKE ELERFYEAYR  60
KYGKDWKKIA AAVRNRTAEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYGILAGSDG  120
EQESDEATGS SQKSQKCAGG KFQNPPPKGS DGPSPDLLNF QSAAPNYGCL SLLKKRRSGS  180
RPRAVAKRTP RVPVSYSYDK DNTEKYISPI KQGLKPRLGS IDDDVAHEIA LALTEASQRG  240
GSLLVSQTPK RKRGKPSPVQ KGSRTCDVSE MNSSKPHGSE MDEDGRELSL GSTDADNGYY  300
SRDKIYLMDA ETADTVEIQQ KGKRYHSKKL KQEESVSNHL DDIKEACSGT EEGQDMVVMK  360
GKFAMEIADE KNSRSYSKGS KKRSKKVLFK RDESSEFDAL QTLADLSLMM PETTADTELS  420
LQLKEEKPEA VNESKLKGNR SSTGVKDTAI KTSKLGKDCT DDVSVIPESE EGNHLTNSGN  480
RTKRQKFLPI KLRMDATEEL KKFISKGKRS LSASQSKHGK LVKPPEHTSS TDHEKEGNNS  540
ASSTAHVRTA NQVNLPTKVR SRRKMNMQKL LIERDKMSSE DILKSSEDIF NDQNRTNSSF  600
FDRAIKQKEQ LSNCLSWYQV RVWCVSEWFY STIDYPWFAK REFVEYLDHV GLSHVPRLTR  660
VEWGVIRSSL GRPRRFSEQF LKEEKEKLNQ YRESVRNHYS ELRSGTKEGL PTDLARPLYV  720
GQRIIAVHPR TREICDGSVL TVEHSRYRVQ FDKRELGIEF VQDIDCMPLN PLENMPASLT  780
RPNVAFGKFM DNFTELQMNG QPRERDIEGY MKFTPCENLE TAYAPSHISP STNYPINNLL  840
QQHKGVSYTD SEVHVGSTGQ AKEEDVLALS HLRHALDKKE AIVSELRCMN DEILENQKDG  900
DNSFKDSELF KKHYAAILLQ LNDINEQVAS ALFCLRQRNT YQGNTCLTGL KPMSGLGNLG  960
GGLPNSFDHS AYQTPESGPH VVEVVESSRS KAQKMVDVAV QALSSLEKEG NGIERIEEAM  1020
DYVNNKLAGN DSGMPSIRSS TSADLVHSSR NSQDQQLETH TTNLLANSRA PDSTLNNSSD  1080
ENSAHIPLEL IAHCVAALFM IQRCTERDFP PADVALVLDS AVTSLQPCCS QNLPVYAEIQ  1140
KCMGIIRNQI LALIPTST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	37	KKKAENADRSGKRKRK
2	248	255	PKRKRGKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.5654	0.0	callus\| flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006489119.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_024958479.1	0.0	protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A067G6D7	0.0	A0A067G6D7_CITSI; Uncharacterized protein
STRING	XP_006489119.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	orange1.1g001099m

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]