PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001436m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CAMTA
Protein Properties Length: 1079aa    MW: 121191 Da    PI: 5.4939
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001436mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11889.1e-59211364118
               CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                        e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+hekLKvg+v+vl+cyYah+e+n++f
  orange1.1g001436m  21 EaQHRWLRPAEICEILCNYQKFHIASEPPSRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEDNENF 112
                        449***************************************************************************************** PP

               CG-1  95 qrrcywlLeeelekivlvhylevk 118
                        qrrcyw+Le++l +iv+vhylev+
  orange1.1g001436m 113 QRRCYWMLEQDLMHIVFVHYLEVQ 136
                        *********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143785.22115141IPR005559CG-1 DNA-binding domain
SMARTSM010766.0E-8518136IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-5221135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.8E-5478579IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.01E-14494579IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.2E-16676789IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.37E-16682788IPR020683Ankyrin repeat-containing domain
CDDcd002049.82E-13683786No hitNo description
PROSITE profilePS5029716.255694788IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0042727756IPR002110Ankyrin repeat
PROSITE profilePS500889.698727759IPR002110Ankyrin repeat
SuperFamilySSF525403.45E-8901952IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.099901923IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.151902931IPR000048IQ motif, EF-hand binding site
PfamPF006129.1E-4903922IPR000048IQ motif, EF-hand binding site
SMARTSM000150.002924946IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.725925949IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4927946IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1079 aa     Download sequence    Send to blast
MADRGSYALA PRLDMQQLQM EAQHRWLRPA EICEILCNYQ KFHIASEPPS RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVREAHEK LKVGSVDVLH CYYAHGEDNE NFQRRCYWML  120
EQDLMHIVFV HYLEVQGNKS NVGDRESNEV TSNPGKHSSL TFSFPGNRTK APSGITDSTS  180
PTSTLTLSCE DADSGYDAED SHQASSRAHL YYELPQMGNG PRMEKMDSGL SYSYFLSPSS  240
VRSSIPGDYV SHAGHIPNDN QDLMIECQKA LGLASWEEVL EHCSGENDNV PPHAKLESNV  300
QKENIFDGEL LSREASEENS GSSLPVQFNW QIPLADNSSH FLKSIMDLSR DLEPAYDLGD  360
GLFEQRTHDA CLLGAPEPFC AFLDQQNELP VQNNLQMQQR DVESHSQTKS NSESEIHGEG  420
TINFSFSVKQ KLLNGEGNLE KVDSFSRWMS KELEEVDNLH VQSSGIEWST EECGNVVDDS  480
SLSPSLSQDQ LFSIIDFSPK WTYTDPEIEV VVTGMFLKSH QEVAKCKWSC MFAEVEVPAE  540
VLADGVLCCR IPPHAVGRVP FYITCSNRLA CSEVREFDYI VGSVKDADIS DIYGSSTSES  600
FLHLRLERIL SMRSSPQNHL SEGLCEKQKL ISKIIQLKEE EESYQMVEAN PEKNLSQHVE  660
KYQILQKIMK EKLYSWLLRK VCEDGKGPCI LDDEGQGVLH LAASLGYDWA IKPTVTAGVS  720
INFRDLSGWT ALHWAAYCGR EKTVAVLLSL GAAPGLLTDP SPEFPLSRTP SDLASSNGHK  780
GISGFLAESS LTSLLLSLKM NDSADDGALE DSIAKAVQTV SEKTATPAND NDESDVLSLK  840
DSLTAICNAT QAADRIHQIF RMQSFQRKQL TEFNNELGIS YEHALSLVAA KSLRPVQGDG  900
LAHSAAIQIQ KKFRGWKKRK EFLLIRQRIV KIQAHVRGHQ ARKKYRPIIW SVGILEKVIL  960
RWRRKGSGLR GFRRDALGMN PNPQHMPLKE DDYDFLKDGR KQTEERLQKA LGRVKSMVQY  1020
PEARAQYRRL LTVVEGSRET KESNMVPNGL EDIADGDLDL IDIDSLLDDD TFMSVAFE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.26134e-82vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487646.10.0calmodulin-binding transcription activator 2 isoform X3
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A2H5QED50.0A0A2H5QED5_CITUN; Uncharacterized protein
STRINGXP_006487645.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]