PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001453m
Common NameCISIN_1g001317mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 1076aa    MW: 118777 Da    PI: 8.227
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001453mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1308.9e-41145222178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqv++C++dls+ak+yhrrhkvCe hsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  orange1.1g001453m 145 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 222
                        6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.8E-34141207IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.855143220IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-37144225IPR004333Transcription factor, SBP-box
PfamPF031101.6E-29146219IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1076 aa     Download sequence    Send to blast
MTMTMTMAKK RHLSYQAQSQ NHYGGEQQNW NPKLWDWDSV GFVGKPVVDS DPEVLRLGGA  60
TASESPNKTT DNINYNYNYN NQKKGNTTTT SAVTVGNVED DGRLDLNLGG GLTAVDVEQP  120
EPPVVTSKPN KRVRSGSPGT APYPMCQVDN CKEDLSNAKD YHRRHKVCEL HSKSTKALVG  180
KQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPEDITSRML IHGHGNQSNN  240
PTANVDIVNL LTALARAQGK TEDRSISCSS VPDREQLLMI LSKINSLPLP ADLAAKLHNF  300
GSLNRKTPVH TSTDVQNRLN ENTSSPSTMD LLAVLSSTLT APSPDTLAAH SQRSSHSSDS  360
EKTKSTCPEQ ATPNFLKRTT MDFPSVGGER SSTSYQSPVE DSDGQNQETR VNLPLQLFSS  420
SPEDDSPPKL SSSRKYFSSD SSNPIEERSP SSSPVVQTFF PMQSTSETVK SEKLSIGREV  480
NANVEGNRSR GSIMPLELFR GSNKAADNCS FQSFPYQAGY TSSSGSDHSP SSLNSDAQDC  540
TGRIIFKLFD KDPSQFPGTL RKEIYNWLSN SPSEMESYIR PGCVILSLYV SMPYATWEQL  600
EGNLLQRINS LVQDSDSDFW RNARFLVHTG KQLASHKDGN IRVCKSWRTW SSPELISVSP  660
LAVVGGQELS FKLRGRNLTN LGTKIHCTFM GGYASQEVTS STCQGSIYDE IILAGLKIQD  720
TSPSVLGRFF IEVENGFKGN SFPVIIADAT ICKELSLLES EFGAEAKVCD VISEHQAHEY  780
GRPRSREEVL HFLNELGWLF QRKRASSIVK GSDYSLSRFK FLLVFSVDRG CCALVKAILD  840
ILVEGNLSMD GLSRESLEML WEIQLLNRAV KMKCRRMVDL LIHYSLTSSN DTPQKYIFPP  900
NLAGPGGITP LHLAACTSDS DDIIDALTND PQEIGPSSWN SILDASGHSP YSYALMKNNH  960
AYNKLVARKL ADRRNGQVTI PVGVEIEQSG LAKEQVHGLS SQFKQRGKSC TKCAVAAAKL  1020
NKRVRGSQGL LNRPYIHSML AIAAVCVCVC LFLRGSPDIG LVAPFKWENL DFGPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31136219184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.100841e-161callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269|PubMed:15703061}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435483.10.0squamosa promoter-binding-like protein 14 isoform X1
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A067H2Z60.0A0A067H2Z6_CITSI; Uncharacterized protein
TrEMBLV4SLU40.0V4SLU4_9ROSI; Squamosa promoter-binding protein 12
STRINGXP_006435483.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]