PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001972m
Common NameCISIN_1g001759mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CAMTA
Protein Properties Length: 989aa    MW: 109668 Da    PI: 7.6778
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001972mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.85.6e-55201363118
               CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        +e + rwl+++ei++iL n++k++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+++vl+cyYah+e+n++
  orange1.1g001972m  20 QEaQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEDNEN 111
                        55599*************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                        fqrr+yw+L+ +le+ivlvhy+evk
  orange1.1g001972m 112 FQRRSYWMLDGQLEHIVLVHYREVK 136
                        **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.85715141IPR005559CG-1 DNA-binding domain
SMARTSM010766.9E-7918136IPR005559CG-1 DNA-binding domain
PfamPF038594.1E-4921134IPR005559CG-1 DNA-binding domain
CDDcd001020.00185411499No hitNo description
Gene3DG3DSA:2.60.40.102.9E-6412501IPR013783Immunoglobulin-like fold
PfamPF018331.1E-6412497IPR002909IPT domain
SuperFamilySSF812962.8E-17412498IPR014756Immunoglobulin E-set
SuperFamilySSF484035.6E-18579710IPR020683Ankyrin repeat-containing domain
PfamPF127962.6E-6594674IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-17604720IPR020683Ankyrin repeat-containing domain
CDDcd002044.70E-15604707No hitNo description
PROSITE profilePS5029717.794606719IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.179648680IPR002110Ankyrin repeat
SMARTSM002480.0033648677IPR002110Ankyrin repeat
SMARTSM00248450687716IPR002110Ankyrin repeat
SuperFamilySSF525401.78E-8814873IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000157.7822844IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.316823852IPR000048IQ motif, EF-hand binding site
PfamPF006120.012826843IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0047845867IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.377846874IPR000048IQ motif, EF-hand binding site
PfamPF006121.6E-4850867IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MAQTRRYVPN QQLDLEQILQ EAQYRWLRPT EICEILRNYQ KFHLTPDPPV RPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSIDVLH CYYAHGEDNE NFQRRSYWML  120
DGQLEHIVLV HYREVKEGYK SGRSAADPGS QIESSQTSSA RSLAQANSSA PAAQTSHASI  180
PNKIDWNGQA VSSEFEDVDS GHGSGTPSVA QSIYGSMSQN ASLVAASIAG LPELSRHPQW  240
FAGSKINHGS GSSMWPQIDN SSRNATSVLD QHGHQNFYVG QPSGADFITH KLTDARLASD  300
STIANIGTCG ERLITDIDVH AVTTSSQGAS QAGIKPKEEL GELKKLDSFG RWMDQEIGGD  360
CDDSLMASDS GNYWNTLDAE NDDKEVSSLS HHMQLEMDSL GPSLSQEQLF SIRDFSPDWA  420
YSGAETKVLI IGMFLGTKKL SSDTKWGCMF GEIEVPAEVL TDNVIRCQAP SHAAGRVPFY  480
ITGSNRLACS EVREFEYREK PSKAGYPVAS KIAPEDEVRL QTRLAKFLYL DPERKWFDCT  540
IEDCNKCKLK NTIYSMRGDS EKDWGRVDES PMAIEGDCPN SRDKLIQNLL RNRLCEWLVW  600
KIHEGGKGPN VIDDGGQGVV HLAAALGYEW AMRPIIATGV SPNFRDARGR TALHWASYFG  660
REETVIMLVK LGAAPGAVED PTPAFPGGQT AADLASSRGH KGIAGYLAEA DLSSHLSSLT  720
VNENGMDNVA AALAAEKANE TAAQIGVQSD GPAAEQLSLR GSLAAVRKSA HAAALIQQAF  780
RVRSFRHRQS IQSSDDVSEV SVDLVALGSL NKVSKMIHFE DYLHFAAIKI QQKYRGWKGR  840
KDFLKIRNHI VKLQAHVRGH QVRKQYKKVV WSVSIVEKAI LRWRRRGSGL RGFRVGNSTA  900
NVASENEKTD EYEFLRIGRK QKFAGVEKAL ERVKSMVRNP EARDQYMRMV AKFENFKMCD  960
DGSGLLSQGE DSLNGPTKDN LHAYVADQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.121251e-140callus| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488762.10.0calmodulin-binding transcription activator 3-like isoform X2
RefseqXP_024033866.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLA0A067G9C70.0A0A067G9C7_CITSI; Uncharacterized protein
STRINGXP_006488760.10.0(Citrus sinensis)
STRINGXP_006419272.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein