PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g002122m
Common NameCISIN_1g001971mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 965aa    MW: 107018 Da    PI: 6.692
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g002122mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.5e-41149226178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqve+C adls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  orange1.1g002122m 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 226
                        6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.9E-34142211IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.385147224IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.41E-39148229IPR004333Transcription factor, SBP-box
PfamPF031108.3E-30150223IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.205.2E-5304333IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.93E-6737849IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.2E-5738848IPR020683Ankyrin repeat-containing domain
CDDcd002042.06E-6738849No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
METRFRGEAH HFYGMNSMDL RAVGKKTLEW DLNDWKWDGD LFIASKLNPA PNENIGRQFF  60
PLAVGNSSNS SSSCSDEVNL GIENGKREVE KKRRAVVVED HNSYEVAAGG LSLKLGGNGH  120
PLSEREMGNW AGSSGKKTKF GGGSSSRAVC QVEDCGADLS NAKDYHRRHK VCEMHSKASR  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTNPDAVA NGSSPNNDQT  240
SGYLLISLLR ILSNMHSSRS DQRTDQDLLS HLLRGLASPA GENGGRGISG LLQEHQDMLN  300
ERTSAGNSEV VQAFLANGQG CPTPFRQQLN ATVSEMPQQV SLPHDARGAE DQDEDVERSP  360
VPANLGTSSI DCPSWVRQDS QQSSPPQTSG NSDSASAQSP SSSSDAQSRT DRIVFKLFGK  420
EPNDFPLVLR AQILDWLSHS PSDMESYIRP GCVILTIYLR QAEAAWEELC CDLTFSLSRL  480
LDLSNDSFWT SGWVYARVQH QIAFIYNGQV VLDTSLPPRS NNYSKILSVK PIAVPASERA  540
QFFVKGINLG RSATRLLCAV EGKYMVQEAT HELLDDVDGF KELDELQCVN FSCSIPAVTG  600
RGFIEIEDHG FSSTFFPFIV AEEDVCSEIR MLESALEFNR TDADVERFGK IDTKNQAMDF  660
IHEIGWLFHR SQSKSRLGHL DPNTDLFPLR RFKWLIEFSM DHEWCAVVKK LLHILLDGTV  720
SLGEHPSLDL ALTELGLLHR AVRKNSRPLV DLLLRFVPLE VSDRLGSENK ALVDGVHKGF  780
LFRPDVIGPA GLTPIHIAAG KDGSEDVLDA LTDDPGMVGI EAWKNARDSS GSTPEDYARL  840
RGHYSYIHLV QKKINKRPNG GHVVVDICGV VPDSNIYQKQ NNESTASFEI GQTPVRPTQH  900
NCKLCHQKLG YATASRSLVY KPAMLSMVAI AAVCVCVALL FKSCPEVLYV FRPFRWEMLD  960
YGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-31143223484squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.116500.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444595.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A067H7A40.0A0A067H7A4_CITSI; Uncharacterized protein
STRINGXP_006444595.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]