PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g002213m

Common Name

CISIN_1g002213mg, LOC102611790

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CPP

Protein Properties

Length: 953aa MW: 103105 Da PI: 6.363

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g002213m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.4	1.9e-15	509	547	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk++Clk+YC+Cfaag +C+e+C C++C+N+ e orange1.1g002213m 509 CKRCNCKKTRCLKLYCDCFAAGIYCAESCACQGCFNRPE 547 79**********************************876 PP
2	TCR	48.1	2.3e-15	591	629	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a + Cs+ C+Ce+CkN orange1.1g002213m 591 RHKRGCNCKKSMCLKKYCECYQAYVGCSSGCRCENCKNV 629 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.7E-15	507	548	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.715	508	631	IPR005172	CRC domain
Pfam	PF03638	2.5E-11	510	545	IPR005172	CRC domain
SMART	SM01114	3.0E-17	591	632	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	9.3E-11	593	628	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 953 aa Download sequence Send to blast
MDSPEPTTAA VKTPASVAAS AAATNITASS SSSPPVQESP FSNFLNNLSP IKPVSGPHEL 60 QGFLGLNSPL AFTSPQINAL RETSSCKRPP CQQLPTAEMS ENDDGVRKFS ADLGNVEKSD 120 SLLQSGLIVN SQKDNDVRSS VQVQPSGSSG CVDEYLADAV DVDCAHSEHG VSISSKQSFD 180 VLQSSVSGRT DSKKALLKFD DKNDAVSNVD VAVAMIGKAE ESIQGKLTCD IEPNEYPKME 240 SNSSSNHASE KQQSENTSAQ NAGSGRGDES DCPSQSLREP LQTIQTYEDF RENAGAILYG 300 PHDNSMHDPE AGKHQRGMSR RCLQFEEAQL KVTVCSSNPS NKLNDVTSSQ LPTTPVESES 360 PDPSHVDLNI TSGKRQLASL PHPVTPVFPP HHTGKSPLTV SKPSGIGLHL NNLIKSSPEG 420 HGAPVGVNLS STEAGMLESK ASIAASSLIS ESFDDMGPLN WPPPVDPNGT PLTMRKFNSE 480 HADNFEEISQ LSPKKKRKKS SSTVDSDGCK RCNCKKTRCL KLYCDCFAAG IYCAESCACQ 540 GCFNRPEYED TVLETRQQIE SRNPLAFAPK IIPRVTEFPD DGNRFTPSSS RHKRGCNCKK 600 SMCLKKYCEC YQAYVGCSSG CRCENCKNVY GRKEEYVGNE EMVNSRAIPE GVSDSKPERV 660 TNKNEFLHAE LYDLRNLTPL TPSFQFSDHG KDASKSRILS GRYVPSPKSD LTILSSYVKS 720 SRTLNSSDSN EMLLEKSREI VDVDPYGQER DYSSADMVEQ FSPRCHSLAD LCDFNPLLDF 780 PSTAMESSAS SKATGWTNVS RLQLCPRSGS LLSGSSLRWR SSPVTPLTQL GGTKSLQALD 840 SDGRLSGILG DDTPEVLKDA STPIKSVKVS SPSRKRVSPP HGRAHEHGSS SSSMLKSGRK 900 FILKAVPSFP PLTPCIDSKG STGQKSFPHL NPCTDSEEST DQERSNFQEN KQ*

Sequence ? help Back to Top

Protein Sequence Length: 953 aa Download sequence Send to blast

MDSPEPTTAA VKTPASVAAS AAATNITASS SSSPPVQESP FSNFLNNLSP IKPVSGPHEL  60
QGFLGLNSPL AFTSPQINAL RETSSCKRPP CQQLPTAEMS ENDDGVRKFS ADLGNVEKSD  120
SLLQSGLIVN SQKDNDVRSS VQVQPSGSSG CVDEYLADAV DVDCAHSEHG VSISSKQSFD  180
VLQSSVSGRT DSKKALLKFD DKNDAVSNVD VAVAMIGKAE ESIQGKLTCD IEPNEYPKME  240
SNSSSNHASE KQQSENTSAQ NAGSGRGDES DCPSQSLREP LQTIQTYEDF RENAGAILYG  300
PHDNSMHDPE AGKHQRGMSR RCLQFEEAQL KVTVCSSNPS NKLNDVTSSQ LPTTPVESES  360
PDPSHVDLNI TSGKRQLASL PHPVTPVFPP HHTGKSPLTV SKPSGIGLHL NNLIKSSPEG  420
HGAPVGVNLS STEAGMLESK ASIAASSLIS ESFDDMGPLN WPPPVDPNGT PLTMRKFNSE  480
HADNFEEISQ LSPKKKRKKS SSTVDSDGCK RCNCKKTRCL KLYCDCFAAG IYCAESCACQ  540
GCFNRPEYED TVLETRQQIE SRNPLAFAPK IIPRVTEFPD DGNRFTPSSS RHKRGCNCKK  600
SMCLKKYCEC YQAYVGCSSG CRCENCKNVY GRKEEYVGNE EMVNSRAIPE GVSDSKPERV  660
TNKNEFLHAE LYDLRNLTPL TPSFQFSDHG KDASKSRILS GRYVPSPKSD LTILSSYVKS  720
SRTLNSSDSN EMLLEKSREI VDVDPYGQER DYSSADMVEQ FSPRCHSLAD LCDFNPLLDF  780
PSTAMESSAS SKATGWTNVS RLQLCPRSGS LLSGSSLRWR SSPVTPLTQL GGTKSLQALD  840
SDGRLSGILG DDTPEVLKDA STPIKSVKVS SPSRKRVSPP HGRAHEHGSS SSSMLKSGRK  900
FILKAVPSFP PLTPCIDSKG STGQKSFPHL NPCTDSEEST DQERSNFQEN KQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-17	512	629	14	121	Protein lin-54 homolog
5fd3_B	1e-17	512	629	14	121	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	494	498	KKRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.6849	1e-172	callus

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ619693	2e-31	AJ619693.1 Lotus corniculatus var. japonicus mRNA for cysteine-rich polycomb-like protein (cpp1 gene).
GenBank	AY612164	2e-31	AY612164.1 Lotus corniculatus var. japonicus cysteine-rich polycomb-like protein 1 mRNA, complete cds; alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006483326.1	0.0	CRC domain-containing protein TSO1
TrEMBL	A0A067FE47	0.0	A0A067FE47_CITSI; Uncharacterized protein
STRING	XP_006483326.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15196	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	4e-56	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	orange1.1g002213m
Entrez Gene	102611790