PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g002489m
Common NameCISIN_1g002489mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 917aa    MW: 100696 Da    PI: 7.7458
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g002489mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-18367466198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  
  orange1.1g002489m 367 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-P 456
                        89**************************555566778***************9989999999***9.********************766.7 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        e++lv+++++
  orange1.1g002489m 457 EGKLVMGFRK 466
                        7777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359032115IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.107.4E-31363473IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-19364466IPR015300DNA-binding pseudobarrel domain
CDDcd100176.58E-22365466No hitNo description
PfamPF023627.9E-16367466IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293367468IPR003340B3 DNA binding domain
SMARTSM010191.0E-19367468IPR003340B3 DNA binding domain
PROSITE profilePS5105013.781595645IPR011124Zinc finger, CW-type
PfamPF074968.5E-11600642IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV  60
YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV  120
LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR  180
LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGWNQF  240
RASRSNCDMQ PSSCLNKPQQ SSTLKDDSST PHFGLAVSYA SPSETNSQIG VSGSHLRPVV  300
QPPLVKQFHG NLPNGADSLG ETQVRNGRPR VDARGRSQLL PRYWPRFTDQ DLQQISGDSN  360
SVITPLFEKM LSASDAGRIG RLVLPKKCAE AYFPPISQPE GLPLKVQDSK GKEWIFQFRF  420
WPNNNSRMYV LEGVTPCIQN MQLQAGDIVT FSRLEPEGKL VMGFRKASSA SASDQDNEAN  480
KAGTGIPANG HAELADPSSW SKVDKSGYIA TEALGAKSSI SRKRKNTTLG SKSKRLKIEN  540
EDVIELKLTW EEAQGLLRPP PNNVPSVVVI EGYEFEEYED APILGKPTIF ATDNVGEKIQ  600
WVQCEDCSKW RKVPANARLP SKWTCSGNLW DPERSVCSVA QELREEQLED LIAPNNPASS  660
KKLKAAKQEP DCVEALEGLD TLANLAILGE GEGLTASSQA TTKHPRHRPG CSCIVCIQPP  720
SGKGPKHKQT CTCNVCLTVK RRFHTLMLRR EKKQSEKDAE TSRKKQQQQK LPVPEKSADD  780
DPLSCSKTGN NSPNEKKVVS EGSDDDSSRI KSSTSPFKGQ IDLNIQPERE EELSPGSDSG  840
SMIRLLQDAT EKYLRQQRLS SSGVNTSSVD NEGLQGGVTG EKISNGITLD GSHQDTDEDH  900
HGSLSVKASA SISATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A7e-643454702127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1522536KRKNTTLGSKSKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920701e-134KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467887.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067G8460.0A0A067G846_CITSI; Uncharacterized protein
STRINGXP_006467887.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-163high-level expression of sugar-inducible gene 2