PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g002554m
Common NameCISIN_1g002489mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 909aa    MW: 99649.6 Da    PI: 7.556
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g002554mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.8e-18359458198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  
  orange1.1g002554m 359 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-P 448
                        89**************************555566778***************9989999999***9.********************766.7 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        e++lv+++++
  orange1.1g002554m 449 EGKLVMGFRK 458
                        7777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359032115IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.107.3E-31355465IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-19356458IPR015300DNA-binding pseudobarrel domain
CDDcd100176.47E-22357458No hitNo description
PfamPF023627.8E-16359458IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293359460IPR003340B3 DNA binding domain
SMARTSM010191.0E-19359460IPR003340B3 DNA binding domain
PROSITE profilePS5105013.781587637IPR011124Zinc finger, CW-type
PfamPF074968.5E-11592634IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV  60
YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV  120
LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR  180
LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGSNCD  240
MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF  300
HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE  360
KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM  420
YVLEGVTPCI QNMQLQAGDI VTFSRLEPEG KLVMGFRKAS SASASDQDNE ANKAGTGIPA  480
NGHAELADPS SWSKVDKSGY IATEALGAKS SISRKRKNTT LGSKSKRLKI ENEDVIELKL  540
TWEEAQGLLR PPPNNVPSVV VIEGYEFEEY EDAPILGKPT IFATDNVGEK IQWVQCEDCS  600
KWRKVPANAR LPSKWTCSGN LWDPERSVCS VAQELREEQL EDLIAPNNPA SSKKLKAAKQ  660
EPDCVEALEG LDTLANLAIL GEGEGLTASS QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK  720
QTCTCNVCLT VKRRFHTLML RREKKQSEKD AETSRKKQQQ QKLPVPEKSA DDDPLSCSKT  780
GNNSPNEKKV VSEGSDDDSS RIKSSTSPFK GQIDLNIQPE REEELSPGSD SGSMIRLLQD  840
ATEKYLRQQR LSSSGVNTSS VDNEGLQGGV TGEKISNGIT LDGSHQDTDE DHHGSLSVKA  900
SASISATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C6e-643374621126B3 domain-containing transcription repressor VAL1
5yzz_C6e-643374621126B3 domain-containing transcription repressor VAL1
5z00_C6e-643374621126B3 domain-containing transcription repressor VAL1
5z00_G6e-643374621126B3 domain-containing transcription repressor VAL1
5z00_K6e-643374621126B3 domain-containing transcription repressor VAL1
5z00_M6e-643374621126B3 domain-containing transcription repressor VAL1
6j9a_A6e-643374622127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1514528KRKNTTLGSKSKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920701e-134KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449227.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067GKC20.0A0A067GKC2_CITSI; Uncharacterized protein
STRINGXP_006449227.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-165high-level expression of sugar-inducible gene 2