PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g002868m

Common Name

CISIN_1g002868mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 873aa MW: 97007.5 Da PI: 7.9201

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g002868m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	37.7	5.5e-12	32	60	50	78
EETTT--SS--S-STTTT-------S--- CS SBP 50 helsefDeekrsCrrrLakhnerrrkkqa 78 ++ efDe+krsCrrrLa+hn+rrrk+++ orange1.1g002868m 32 SSVAEFDEGKRSCRRRLAGHNKRRRKTHP 60 4689**********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	10.75	1	58	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.7E-5	32	57	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.37E-8	33	63	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.49E-7	638	752	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.4E-6	640	753	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.20E-8	641	752	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence Send to blast
MPRITTGDIR FVICIQRQLK HLWETLCSDS ASSVAEFDEG KRSCRRRLAG HNKRRRKTHP 60 DNVVNGGSLN DERSSSYLLI SLLRILSNMH SNNSDQTKDQ DLLSHLFRNL AGVVGTSNVR 120 NLSGLLQGSQ GLLNAGPSNG NVEKVPDLVS TGPEPSRPST SACMTDNRIG FSEPMRSVGQ 180 CGTVPASDLL QKKISTNDAH SGRVQALSAS QSIEMFPSRS SFSAKANEPE ATFGRSKMSN 240 IDLNNVYDDS QERVEHLELS HAPVNPGPVS LYSPLWLHPG SNKSSPPQAS ANSDSTSSQS 300 QSSSSGEAQS RTDRIVFKLF GKDPNDFPLV LRRQILDWLS HSPTDIESYI RPGCIVLTIY 360 LRLGKPTWEE LCCDLGSSLR RLLEGSDDLF WRTGWLYARV QHSVAFIYNG QVVLDTPLLL 420 KSHKSCRISS IKPIAVPVSE RVKFVVKGFN LSRSTTRLLC AIEGSYLVQE TCYDLMGGAD 480 TVNENDELQC LSFPCSIPNV FGRGFIEVED HGLSSSFVPF IVAEQEVCSE ICMLESAIEA 540 AEISDDFQKI AEKTEVKNQA LDFLHEMGWL LHRSHLKFRV GHLHPNFYFF PFKRFKWLLE 600 FSMEHDWCAV VKKLLGILFD GTVDTGDHTS SELAILEMGL LHKAVRRNCR PMVELLLNYA 660 PDNVLDKPGS RQKQLVDRAG SGFIFKPNVI GPAGLTPLHV AACRDDAENV LDALTDDPGS 720 VGIEAWKSAQ DSTGLTPNDY ASLRAHHSYI HLVQRKINKK SSESGRVILD IPGSIVDWDS 780 KQKPLKGNKS SRVLSLQTEK ITTKVMQQQC RLCEQKVAYR NMRSSLVYRP VMLSMVAIAA 840 VCVCVALLFK SSPEVLYIFR PFRWELLKYG SS*

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence Send to blast

MPRITTGDIR FVICIQRQLK HLWETLCSDS ASSVAEFDEG KRSCRRRLAG HNKRRRKTHP  60
DNVVNGGSLN DERSSSYLLI SLLRILSNMH SNNSDQTKDQ DLLSHLFRNL AGVVGTSNVR  120
NLSGLLQGSQ GLLNAGPSNG NVEKVPDLVS TGPEPSRPST SACMTDNRIG FSEPMRSVGQ  180
CGTVPASDLL QKKISTNDAH SGRVQALSAS QSIEMFPSRS SFSAKANEPE ATFGRSKMSN  240
IDLNNVYDDS QERVEHLELS HAPVNPGPVS LYSPLWLHPG SNKSSPPQAS ANSDSTSSQS  300
QSSSSGEAQS RTDRIVFKLF GKDPNDFPLV LRRQILDWLS HSPTDIESYI RPGCIVLTIY  360
LRLGKPTWEE LCCDLGSSLR RLLEGSDDLF WRTGWLYARV QHSVAFIYNG QVVLDTPLLL  420
KSHKSCRISS IKPIAVPVSE RVKFVVKGFN LSRSTTRLLC AIEGSYLVQE TCYDLMGGAD  480
TVNENDELQC LSFPCSIPNV FGRGFIEVED HGLSSSFVPF IVAEQEVCSE ICMLESAIEA  540
AEISDDFQKI AEKTEVKNQA LDFLHEMGWL LHRSHLKFRV GHLHPNFYFF PFKRFKWLLE  600
FSMEHDWCAV VKKLLGILFD GTVDTGDHTS SELAILEMGL LHKAVRRNCR PMVELLLNYA  660
PDNVLDKPGS RQKQLVDRAG SGFIFKPNVI GPAGLTPLHV AACRDDAENV LDALTDDPGS  720
VGIEAWKSAQ DSTGLTPNDY ASLRAHHSYI HLVQRKINKK SSESGRVILD IPGSIVDWDS  780
KQKPLKGNKS SRVLSLQTEK ITTKVMQQQC RLCEQKVAYR NMRSSLVYRP VMLSMVAIAA  840
VCVCVALLFK SSPEVLYIFR PFRWELLKYG SS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	58	KRRRKTH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.5548	0.0	flower\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269\|PubMed:10524240}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ567403	2e-55	AJ567403.1 Citrus reticulata microsatellite DNA, clone Ci02B07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488748.1	0.0	squamosa promoter-binding-like protein 1 isoform X2
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A067G9I0	0.0	A0A067G9I0_CITSI; Uncharacterized protein
STRING	XP_006488745.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	orange1.1g002868m

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]