PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g003138m

Common Name

CISIN_1g002868mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 846aa MW: 94018 Da PI: 7.9598

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g003138m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	47.7	4.1e-15	2	33	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 +rfh l+efDe+krsCrrrLa+hn+rrrk+++ orange1.1g003138m 2 GRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 33 79***************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	15.05	1	31	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.8E-4	2	18	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.51E-12	2	36	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.8E-8	2	30	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.49E-7	611	725	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.3E-6	613	726	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.33E-8	614	725	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence Send to blast
MGRFHVLQEF DEGKRSCRRR LAGHNKRRRK THPDNVVNGG SLNDERSSSY LLISLLRILS 60 NMHSNNSDQT KDQDLLSHLF RNLAGVVGTS NVRNLSGLLQ GSQGLLNAGP SNGNVEKVPD 120 LVSTGPEPSR PSTSACMTDN RIGFSEPMRS VGQCGTVPAS DLLQKKISTN DAHSGRVQAL 180 SASQSIEMFP SRSSFSAKAN EPEATFGRSK MSNIDLNNVY DDSQERVEHL ELSHAPVNPG 240 PVSLYSPLWL HPGSNKSSPP QASANSDSTS SQSQSSSSGE AQSRTDRIVF KLFGKDPNDF 300 PLVLRRQILD WLSHSPTDIE SYIRPGCIVL TIYLRLGKPT WEELCCDLGS SLRRLLEGSD 360 DLFWRTGWLY ARVQHSVAFI YNGQVVLDTP LLLKSHKSCR ISSIKPIAVP VSERVKFVVK 420 GFNLSRSTTR LLCAIEGSYL VQETCYDLMG GADTVNENDE LQCLSFPCSI PNVFGRGFIE 480 VEDHGLSSSF VPFIVAEQEV CSEICMLESA IEAAEISDDF QKIAEKTEVK NQALDFLHEM 540 GWLLHRSHLK FRVGHLHPNF YFFPFKRFKW LLEFSMEHDW CAVVKKLLGI LFDGTVDTGD 600 HTSSELAILE MGLLHKAVRR NCRPMVELLL NYAPDNVLDK PGSRQKQLVD RAGSGFIFKP 660 NVIGPAGLTP LHVAACRDDA ENVLDALTDD PGSVGIEAWK SAQDSTGLTP NDYASLRAHH 720 SYIHLVQRKI NKKSSESGRV ILDIPGSIVD WDSKQKPLKG NKSSRVLSLQ TEKITTKVMQ 780 QQCRLCEQKV AYRNMRSSLV YRPVMLSMVA IAAVCVCVAL LFKSSPEVLY IFRPFRWELL 840 KYGSS*

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence Send to blast

MGRFHVLQEF DEGKRSCRRR LAGHNKRRRK THPDNVVNGG SLNDERSSSY LLISLLRILS  60
NMHSNNSDQT KDQDLLSHLF RNLAGVVGTS NVRNLSGLLQ GSQGLLNAGP SNGNVEKVPD  120
LVSTGPEPSR PSTSACMTDN RIGFSEPMRS VGQCGTVPAS DLLQKKISTN DAHSGRVQAL  180
SASQSIEMFP SRSSFSAKAN EPEATFGRSK MSNIDLNNVY DDSQERVEHL ELSHAPVNPG  240
PVSLYSPLWL HPGSNKSSPP QASANSDSTS SQSQSSSSGE AQSRTDRIVF KLFGKDPNDF  300
PLVLRRQILD WLSHSPTDIE SYIRPGCIVL TIYLRLGKPT WEELCCDLGS SLRRLLEGSD  360
DLFWRTGWLY ARVQHSVAFI YNGQVVLDTP LLLKSHKSCR ISSIKPIAVP VSERVKFVVK  420
GFNLSRSTTR LLCAIEGSYL VQETCYDLMG GADTVNENDE LQCLSFPCSI PNVFGRGFIE  480
VEDHGLSSSF VPFIVAEQEV CSEICMLESA IEAAEISDDF QKIAEKTEVK NQALDFLHEM  540
GWLLHRSHLK FRVGHLHPNF YFFPFKRFKW LLEFSMEHDW CAVVKKLLGI LFDGTVDTGD  600
HTSSELAILE MGLLHKAVRR NCRPMVELLL NYAPDNVLDK PGSRQKQLVD RAGSGFIFKP  660
NVIGPAGLTP LHVAACRDDA ENVLDALTDD PGSVGIEAWK SAQDSTGLTP NDYASLRAHH  720
SYIHLVQRKI NKKSSESGRV ILDIPGSIVD WDSKQKPLKG NKSSRVLSLQ TEKITTKVMQ  780
QQCRLCEQKV AYRNMRSSLV YRPVMLSMVA IAAVCVCVAL LFKSSPEVLY IFRPFRWELL  840
KYGSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	31	KRRRKTH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.5548	0.0	flower\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269\|PubMed:10524240}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ567403	2e-55	AJ567403.1 Citrus reticulata microsatellite DNA, clone Ci02B07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488746.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_006488747.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A067G9Y1	0.0	A0A067G9Y1_CITSI; Uncharacterized protein
STRING	XP_006488745.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	orange1.1g003138m

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]