PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g003507m
Common NameCISIN_1g003507mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 815aa    MW: 89764 Da    PI: 6.7197
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g003507mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.9e-07231251526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ff + G+C  G++C+F H+
  orange1.1g003507m 231 ICDFFTK-GWCIKGNSCRFLHV 251
                        8**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.19E-6226250IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017226252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756226253IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-5231251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4231254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MSASSAVAAT RTDDVDEVDN LSDSPNDVSE DRNDVSEKVE SEEHKSHVES GSSSREKSKV  60
RLPSDTIAIE ESRDNFDCSN GPFSRQKVVS SKNHEESKYL KSGKHLTPAE DNGSQEYEIS  120
KKYVGAFLPV KARKEQNELH TDGEVHLHNS QIMESETTSP SSLTRKSMAG GVRIRDCLGE  180
GTSVEGSKPM DTHSADDKQR MESRFASPAV RIRSLSPGAE IKDGNKRPAV ICDFFTKGWC  240
IKGNSCRFLH VKDDVNNTTQ LLGEDVATAS AKASLKTDAQ FDEGSRNMTK RSRMPSFPDA  300
LACSGGNDDL FSSDLSSERI LTQERGESKR LPQFQENHRL SLLQKENTSS DNSPSSREDI  360
GCSLSSKDAE RESFRHNWPA DYGNCASLIN EGSSPIFRNN MHLEYRSSSI GSAVLSSNYH  420
SGNPSTYPIS LEERPWIQSK YMHNDYSSPA FSHAMNSSLG TSGPTSSGFP SHHISTWTGL  480
SLPFSSASLS ASPLDAKKLL DSNRECRNSR LALFLRSTSP FSVSEPEKPQ ISSDYKTKIS  540
SNDWEPSVPF QPSFVIIDTS SPGSKYDPLR DSFDSPKIGH ISLKLAFSSV GDSALNTSDQ  600
KLCGDSMLSN TVVPGCNGDK SSVSSHGRFS ENVVDKNCCT ARNDSLADGE EGVGTSIIDE  660
QNGAMPKEND PSVSTYFKDI SKSKKPNAKY DSRIQNDRCR RNKEPKVDRA RQNSEMDLEH  720
KADGDGRKES KLMKHFRNDL VEFVKELLKP SWREGRLSKD AHNTIVKKAV DKVLATLHPH  780
QIPTTMESTK QYLSSSQPKI AKLVEGYVDK YGKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467754.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_006467755.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_024951114.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_024951115.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A067GDI00.0A0A067GDI0_CITSI; Uncharacterized protein
STRINGXP_006467754.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156171016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-42C3H family protein