PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g003750m
Common NameCISIN_1g0037502mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 799aa    MW: 88438 Da    PI: 4.8436
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g003750mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07735790147
                        TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                        + +WT+ E+e+l+++v+++ +       Wk+I +        gRt+ ++k++w++ 
  orange1.1g003750m 735 KVPWTAKEEEILKKGVQKFASVddriiPWKKILEFGSsvffSGRTAIDLKDKWRNM 790
                        579****************988***********9888999*9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.09E-11417473IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.2E-9418473IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.983424473IPR019787Zinc finger, PHD-finger
SMARTSM002498.5E-9426471IPR001965Zinc finger, PHD-type
PROSITE patternPS013590427470IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.201730791IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-11731792IPR009057Homeodomain-like
SuperFamilySSF466891.25E-10732792IPR009057Homeodomain-like
SMARTSM007176.2E-5734793IPR001005SANT/Myb domain
CDDcd116602.87E-13736792No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MDGLADFSSA GSSLLWLWII EYLASFKEVD TSILHDLIET APEIPDDLAK VTREMVALRC  60
LEDLFGSSDK VNDDGLSCTE NKVGFALSES CEDVLQQILQ ETSASDLNIA GPELLKWDVH  120
PFIMHKRALM PKCALQHLKD TILEGTHPLA ASLKETSGLT CVSECGTARV GDLDHNAQAM  180
SEKENLLPST CENRDGQPRD NLHIRNMLPF KRSRGDMAIR DVAAHTNGVQ EKCDLNYNAK  240
KHKQDAISNH QSADQISVPT CGKETVEPLS GRDVAVAGRE GSHFSNQSQD AGLEESQFPD  300
DGCDNCDDLR RLGQNGDVND DQIQHNQAED GHNAARLPRA EPVQNATVDE ANITERVPSV  360
GTQHEDTEDE SRGEVEHSCE EETLSDNDAY HNDRIDVAVK KSHFLSSQAA LGHDSLATSG  420
WTEQNLCVKC NKDGQLLSCS SSTCPLAVHE NCLGFPVKFD EKGNFHCPFC AYTLSISEYL  480
EAKKRASVAR KELAAFMQMG SVCHQMDLAN KLHSKDPGHS GSNGDKDIHE NGNVGEQENN  540
QENQNGQHLH DVSDQLCQKH RAKKKKAEPL HDVSDPLCQR HSANKKKAET SASCVNANSP  600
CREEEANAFS GRDCISNGDK VVEENMDNYC PSERGLEGQP ERTPPECGKL ACTNTYVEPM  660
DDTEAEAKLQ KEDVQPASSE SSDPPESPVI ALNIDEEEIS ESEDDKFIIS NYSIRFRRPK  720
THYTYPPIPQ LRRKKVPWTA KEEEILKKGV QKFASVDDRI IPWKKILEFG SSVFFSGRTA  780
IDLKDKWRNM CKGSPRSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421445.10.0uncharacterized protein LOC18031662 isoform X1
RefseqXP_024037365.10.0uncharacterized protein LOC18031662 isoform X1
TrEMBLA0A067DRC60.0A0A067DRC6_CITSI; Uncharacterized protein
STRINGXP_006421445.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1434755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.28e-08MYB_related family protein