PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g004887m
Common NameCISIN_1g004266mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 726aa    MW: 79870.7 Da    PI: 7.5838
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g004887mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.3e-06312332526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+++++ G C++Gd C +aHg
  orange1.1g004887m 312 PCPDHRK-GACSRGDMCEYAHG 332
                        7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.33E-1699181IPR020683Ankyrin repeat-containing domain
PfamPF127965.7E-1099168IPR020683Ankyrin repeat-containing domain
SMARTSM002486.9E-499129IPR002110Ankyrin repeat
PROSITE profilePS5029719.35999206IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.5E-18100179IPR020683Ankyrin repeat-containing domain
CDDcd002047.56E-16101177No hitNo description
SMARTSM002480.0023134166IPR002110Ankyrin repeat
PROSITE profilePS5008811.915134169IPR002110Ankyrin repeat
SMARTSM003560.0015307333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.69312334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4339370IPR000571Zinc finger, CCCH-type
SMARTSM0035641342365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MVAVPAVTMR NKSSPLKISI SIFQKHTQNV FLVDFAINDR TLLILLFFQN YLIMCGGSEK  60
LSSKALAPSA SPPSKPSLQR NMIGLWYSFQ RLSKKIVLQH RTPLMVAAEY GSVDVVKLIL  120
SLTKADVNLT CGLDKSTALH CAASGGSVNA VDVVKLLLFA GADSNLTDAH GNRPFDVIVV  180
HPNVPDSRVS LEDLLKNGGS VSFDELQVSS VDLRSSSSLS SSSDDSSLSS LTCKSDDVHA  240
FVAPEKKEYP IDPSLPDIKD SIYASDEFRM YSFKIRPCSR AYSHDWTECP FAHPGENARR  300
RDPRKFHYSC MPCPDHRKGA CSRGDMCEYA HGIFESWLHP AQYRTKLCKD GTSCMRRVCF  360
FAHALDELRP LYASTGSGMP SPQSATAMNM LPGSPSAVSA MLPSPFTPPM SPSNDILCLS  420
MAWPQQNIPT LHLPSSNLQA SRLRSSLNAR DIPVEDLGML RDFEMQNQLI NEFSHSQPQF  480
GTSSGGNMSV RLNRLTPTKL DQLSYPEISS PQYSDQFAAS NVFSPSHKSM VLNQLQQQQQ  540
NMSSPINTNV FSPMNVDHPL LQASFGISSP GRMSPRKMEP ISPMSPRVST LTPREKLLQQ  600
LHSLSLREHG PRLSCDLKSD SPIGSVLNSW SKLESPSMKI DWSIQADELN HLRRSHSFGR  660
NGEGLDVSTV QSHMRETPSK MKETTPAPPS SMSFPTEGAN LNPQSESGDH LGAWLDQLQL  720
DQIVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.114500.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006470613.10.0zinc finger CCCH domain-containing protein 56 isoform X2
RefseqXP_024950967.10.0zinc finger CCCH domain-containing protein 56 isoform X2
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A067FCU70.0A0A067FCU7_CITSI; Uncharacterized protein
STRINGXP_006470610.10.0(Citrus sinensis)
STRINGXP_006446118.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain