PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005228m
Common NameCISIN_1g0037502mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 708aa    MW: 78459.8 Da    PI: 5.3659
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005228mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.8e-07644699147
                        TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                        + +WT+ E+e+l+++v+++ +       Wk+I +        gRt+ ++k++w++ 
  orange1.1g005228m 644 KVPWTAKEEEILKKGVQKFASVddriiPWKKILEFGSsvffSGRTAIDLKDKWRNM 699
                        579****************988***********9888999*9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.2E-11326382IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.8E-10327382IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.983333382IPR019787Zinc finger, PHD-finger
SMARTSM002498.5E-9335380IPR001965Zinc finger, PHD-type
PROSITE patternPS013590336379IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.201639700IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-11640701IPR009057Homeodomain-like
SuperFamilySSF466891.01E-10641701IPR009057Homeodomain-like
SMARTSM007176.2E-5643702IPR001005SANT/Myb domain
CDDcd116602.30E-13645701No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MLSRDNLVCQ TSASDLNIAG PELLKWDVHP FIMHKRALMP KCALQHLKDT ILEGTHPLAA  60
SLKETSGLTC VSECGTARVG DLDHNAQAMS EKENLLPSTC ENRDGQPRDN LHIRNMLPFK  120
RSRGDMAIRD VAAHTNGVQE KCDLNYNAKK HKQDAISNHQ SADQISVPTC GKETVEPLSG  180
RDVAVAGREG SHFSNQSQDA GLEESQFPDD GCDNCDDLRR LGQNGDVNDD QIQHNQAEDG  240
HNAARLPRAE PVQNATVDEA NITERVPSVG TQHEDTEDES RGEVEHSCEE ETLSDNDAYH  300
NDRIDVAVKK SHFLSSQAAL GHDSLATSGW TEQNLCVKCN KDGQLLSCSS STCPLAVHEN  360
CLGFPVKFDE KGNFHCPFCA YTLSISEYLE AKKRASVARK ELAAFMQMGS VCHQMDLANK  420
LHSKDPGHSG SNGDKDIHEN GNVGEQENNQ ENQNGQHLHD VSDQLCQKHR AKKKKAEPLH  480
DVSDPLCQRH SANKKKAETS ASCVNANSPC REEEANAFSG RDCISNGDKV VEENMDNYCP  540
SERGLEGQPE RTPPECGKLA CTNTYVEPMD DTEAEAKLQK EDVQPASSES SDPPESPVIA  600
LNIDEEEISE SEDDKFIISN YSIRFRRPKT HYTYPPIPQL RRKKVPWTAK EEEILKKGVQ  660
KFASVDDRII PWKKILEFGS SVFFSGRTAI DLKDKWRNMC KGSPRSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421445.10.0uncharacterized protein LOC18031662 isoform X1
RefseqXP_006493906.10.0uncharacterized protein LOC102627827 isoform X1
RefseqXP_024037365.10.0uncharacterized protein LOC18031662 isoform X1
TrEMBLA0A067DQX60.0A0A067DQX6_CITSI; Uncharacterized protein
STRINGXP_006493906.10.0(Citrus sinensis)
STRINGXP_006421445.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.29e-08MYB_related family protein