PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005945m
Common NameCISIN_1g002489mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 669aa    MW: 72922.6 Da    PI: 7.2205
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005945mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-18119218198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  
  orange1.1g005945m 119 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-P 208
                        89**************************555566778***************9989999999***9.********************766.7 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        e++lv+++++
  orange1.1g005945m 209 EGKLVMGFRK 218
                        7777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-31115225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-19116218IPR015300DNA-binding pseudobarrel domain
CDDcd100173.39E-22117218No hitNo description
PROSITE profilePS5086311.293119220IPR003340B3 DNA binding domain
PfamPF023625.0E-16119218IPR003340B3 DNA binding domain
SMARTSM010191.0E-19119220IPR003340B3 DNA binding domain
PROSITE profilePS5105013.781347397IPR011124Zinc finger, CW-type
PfamPF074965.8E-11352394IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF  60
HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE  120
KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM  180
YVLEGVTPCI QNMQLQAGDI VTFSRLEPEG KLVMGFRKAS SASASDQDNE ANKAGTGIPA  240
NGHAELADPS SWSKVDKSGY IATEALGAKS SISRKRKNTT LGSKSKRLKI ENEDVIELKL  300
TWEEAQGLLR PPPNNVPSVV VIEGYEFEEY EDAPILGKPT IFATDNVGEK IQWVQCEDCS  360
KWRKVPANAR LPSKWTCSGN LWDPERSVCS VAQELREEQL EDLIAPNNPA SSKKLKAAKQ  420
EPDCVEALEG LDTLANLAIL GEGEGLTASS QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK  480
QTCTCNVCLT VKRRFHTLML RREKKQSEKD AETSRKKQQQ QKLPVPEKSA DDDPLSCSKT  540
GNNSPNEKKV VSEGSDDDSS RIKSSTSPFK GQIDLNIQPE REEELSPGSD SGSMIRLLQD  600
ATEKYLRQQR LSSSGVNTSS VDNEGLQGGV TGEKISNGIT LDGSHQDTDE DHHGSLSVKA  660
SASISATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-66972222127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274288KRKNTTLGSKSKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920701e-135KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467888.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067GK210.0A0A067GK21_CITSI; Uncharacterized protein
STRINGXP_006467887.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-165HSI2-like 1