PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006043m
Common NameCISIN_1g003968mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CPP
Protein Properties Length: 664aa    MW: 72513.3 Da    PI: 5.4802
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006043mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.12.7e-16367405240
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  orange1.1g006043m 367 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 405
                        689**********************************96 PP
2TCR512.8e-16452491140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  orange1.1g006043m 452 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNTF 491
                        589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-18366407IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.621367492IPR005172CRC domain
PfamPF036388.8E-12369404IPR005172CRC domain
SMARTSM011148.7E-18452493IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.8E-12454490IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MEEVSVEASN DSKFAIELPQ ALKYDCGSPG CDSNPCNIES NCMTEMASTS VSVVQFVQEA  60
SENGASEADV RLQRTCQMEQ KNEVTGCEWE SLISDAADLL IFNLPNDSED FKGLMQKSLD  120
SGGRYASVTP RYINGQPIME MIDPVGTDHQ NGMEHQSTQP GETSILNDEL DECFTGDPSE  180
NGVTAMGMSN PASCKPISNL HRGMLRRCLD FELVTRRKNA DGSSNYGSSV ILHSDEKFAS  240
EDKQLVPLKP GSDSPRCMVP GIGLHLNALA ITPQENKNIG IESLSSVRQI SLPGANASFH  300
SPENCEDPHH EPLTSASTER DIVAVENGVL LAEDASQTSA YLAEEEYNQN SPKKKRRRME  360
NAGENESCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCQD CFNKPIHEDT VLATRKQIES  420
RNPLAFAPKV IRSSDSLPEV GEDTSKTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSI  480
NCRCEGCKNT FGRKDGSSST DPEAEPEDEE MEMCEKSGVD KRFQKTEFLS NEEQNPGSAL  540
PTTPLRLSRP LVQLPFSTKC KPPRSLLSIG SSSGFFTGHN YGKPNILRSQ PKFEKSLQTA  600
PEDEMPEILR GNCTPCSGIK TSSPNSKRVS PPHTILGSSP SRRSGRKLIL QSIPSFPSLT  660
PKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1736948912120Protein lin-54 homolog
5fd3_B4e-1736948912120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352357KKKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006489438.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A067G7A00.0A0A067G7A0_CITSI; Uncharacterized protein
STRINGXP_006489438.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-115TESMIN/TSO1-like CXC 2