PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006602m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 640aa    MW: 71296.1 Da    PI: 8.3164
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006602mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP41.82.9e-1322514978
                       EEETTT--SS--S-STTTT-------S--- CS
                SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78
                       fh ls+fDe+krsCrr+L++hn+rrr+k+ 
  orange1.1g006602m 22 FHLLSDFDEGKRSCRRKLERHNNRRRRKSV 51
                       9*************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.255149IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-102252IPR004333Transcription factor, SBP-box
PfamPF031109.3E-72249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MRKRFYRFAR WREQEILSTV WFHLLSDFDE GKRSCRRKLE RHNNRRRRKS VDSKGAVDSE  60
PPGASRCEDI ICDDDSGKDS LCLSSQITDQ EAFLESEDGL VSALNSAPNT QNVKSDSGIS  120
AVASGEIRTD RGKDDSKASL SPSNCDNKSS YSSLCPTGRI SFKLYDWNPA EFPRRLRHQI  180
FHWLASMPVE LEGYIRPGCT ILTVFIAMPK IMWAKLYEDP IRYVHNFVVE PGTASMLSGR  240
GSMFVHLNNM IFHVKGGTSV VKVDVKVQAP KLHYVQPSCF EAGKPLEFVA CGSNLIQPKL  300
RYVTYLPHDY CIVSPLGGSE GESLALEHQF YKINVPHIEA NLFGPAFIEV ENESGLSNFI  360
PVLIGDKGTC SEINIIQQRF EASFFSKRSQ FMASGLLSDL CEVSALRQKA LTELLVDIAW  420
LLKAPASESF RQTISCSEVQ RFNQLLSFLI YNESTTILEK MLQNMKILMN NIESNIAVNG  480
ISDSDMGLLL KYMDYARGIL CQKVKKDKGP MQHSGNIVPK MISSSQSCLQ ANSLVPSTKQ  540
DLVVRSNDKI GAVMGSATVD RCEVVPLLNR EVVMNVNLIK EWPRKSCSPI FSGRVLSSLP  600
TVTVIAMAAV CFGVCLVVLH PQKVGHFATS IRRSLFGNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13547RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419725.10.0squamosa promoter-binding-like protein 7 isoform X2
TrEMBLV4S2K00.0V4S2K0_9ROSI; Uncharacterized protein
STRINGXP_006419724.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7