PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007139m
Common NameCISIN_1g007139mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 617aa    MW: 70336.8 Da    PI: 7.2038
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007139mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.39.5e-14119182270
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                        W+ +e laL+++r+++e+++ +       We+vs++++e g++rs+++Ckek+e+ ++ + +i+ +++ 
  orange1.1g007139m 119 WSLDELLALLRIRSSLENWFPEL-----TWEHVSRRLEELGYKRSAEKCKEKFEEESRNFSNINYNKNY 182
                        ********************987.....9*******************************999877665 PP
2trihelix91.96.7e-29468555186
           trihelix   1 rWtkqevlaLiearremeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        rW+++ev aLi++r ++ ++ ++++   ++ plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  orange1.1g007139m 468 RWPRDEVFALINLRCNLYNNGEDKEgaaSRVPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDANKKR-SIDSRTCPYFHQLS 555
                        8**************999999985333499*******************************************8.78889*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071713115172IPR001005SANT/Myb domain
PfamPF138379.4E-9117180No hitNo description
PROSITE profilePS500906.156119170IPR017877Myb-like domain
SMARTSM007171.1465530IPR001005SANT/Myb domain
CDDcd122032.71E-24467535No hitNo description
PfamPF138379.1E-19467555No hitNo description
PROSITE profilePS500906.411468528IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MFDEVPADQL HQFIAAASRA SVVPFPLSFS TSSSSSSLHL HHHHHHHHHG SSAFPASFDP  60
FSSTTTSQQV QQPHQLLHSL PQQKINEEKE ENRSSSSSLV GMNLEVVQRE RLIQKDPAWS  120
LDELLALLRI RSSLENWFPE LTWEHVSRRL EELGYKRSAE KCKEKFEEES RNFSNINYNK  180
NYRTLFSEFD DEEQELYHRG QNSPHGHNVA DEANEKLDQQ QPREEEEEVE EGDKIMEQEA  240
EHPRNDQTVA NKSSCYHHQD KEKLSKGKKK RKFREKNFER FKGFCEDIVK KMMAQQEEMH  300
NKLIEDLVKR DEEKVAREEA WKKQQIDRFN KELEIRASEQ AITSNRQATI IKFLTRFSSS  360
SSSSSSSTSE ESGVNKHKVP NYSIPNPLTT SSSLILAQNP NQTQNPRSNL APTSVPKKQT  420
SSTIAISPQN PSSAATQNKP LAPTSTPIQN SDSQKLITSD GKDDIGKRWP RDEVFALINL  480
RCNLYNNGED KEGAASRVPL WERISQGMSE LGYKRSAKRC KEKWENINKY FRKTKDANKK  540
RSIDSRTCPY FHQLSTLYNQ GTLVAPSDGT ENRPAALPEN HHSSSQGGNS STHSTMPVAQ  600
GDKNLVQISP ALDFEF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.117230.0callus| flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471910.10.0trihelix transcription factor GTL2
RefseqXP_024038652.10.0trihelix transcription factor GTL2
TrEMBLA0A067DF240.0A0A067DF24_CITSI; Uncharacterized protein
STRINGXP_006432981.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.13e-80Trihelix family protein