PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007271m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-X1
Protein Properties Length: 611aa    MW: 68684.5 Da    PI: 8.5149
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007271mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1171.3e-05137156120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CG+H C++ C+ G+CppC++
  orange1.1g007271m 137 CGRHACKRRCCNGDCPPCSE 156
                        ******************85 PP
2zf-NF-X117.87.1e-06158183120
           zf-NF-X1   1 CG......kHkCqklCHeGpCppCpq 20 
                        CG      +HkC ++CH+G C pCp+
  orange1.1g007271m 158 CGkrllckNHKCPSPCHRGACAPCPL 183
                        777777779***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060081.36E-72063No hitNo description
SMARTSM004380.0573049IPR000967Zinc finger, NF-X1-type
CDDcd060084.27E-674123No hitNo description
SMARTSM004382.984104IPR000967Zinc finger, NF-X1-type
CDDcd060082.60E-7127175No hitNo description
SMARTSM004380.033137156IPR000967Zinc finger, NF-X1-type
CDDcd060081.87E-10154202No hitNo description
SMARTSM004380.015164183IPR000967Zinc finger, NF-X1-type
SMARTSM0043841227242IPR000967Zinc finger, NF-X1-type
SMARTSM00438180250295IPR000967Zinc finger, NF-X1-type
SMARTSM0043817332365IPR000967Zinc finger, NF-X1-type
CDDcd060088.88E-5363404No hitNo description
SMARTSM004380.015375393IPR000967Zinc finger, NF-X1-type
SMARTSM0043857438460IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MCRCGRVEEE RECCERDFRC ENACGKALDC GKHVCERGCH VGQCGGCPLQ GKRTCPCGKR  60
VYEGMSCDVA VPLCGATCDK MLSCRIHRCH DRCHRGPCIE TCRMVIAKLC RCRSLKKEVP  120
CYQDLVCERK CQRMRDCGRH ACKRRCCNGD CPPCSEICGK RLLCKNHKCP SPCHRGACAP  180
CPLMVTISCA CGETQFEVPC GTEKDQKPPK CRKSCHVIPL CRHRSICKPH KCHYGACPPC  240
RLLCEEEYPC GHSCKLSCHG PRPPPNPEFT LKTKKKKSNH QSEVTPGSPC PPCPELIWRS  300
CVGEHIGAER MMVCSDRTQF SCDNLCGNPL PCGNHYCTKY CHALKSQSSL SVETRSAESC  360
EVCSLPCQKE RLPTCPHSCP LPCHPGECPP CKVLVKRSCH CGSMVHVFEC IYFNTLSEKE  420
QMAARSCGGP CHRKLPYCTH LCPEICHPGQ CPLPEQCCKK VTVRCGCQTL KKEWQCLDVQ  480
AAYRNIGRDP KDISKNQFGL GLLRCNSDCK SKVQVVDSVL QSRKPKVEEK EPATEKHVGK  540
RRKRRERVRV VNQASRLQRI FTAVKWLLLF VTLSVAVAAG LYYGYKGLLK LSDWMNEVEE  600
QRQRKRFPRI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.92710.0fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486315.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2H5NJS10.0A0A2H5NJS1_CITUN; Uncharacterized protein
TrEMBLV4TGY20.0V4TGY2_9ROSI; Uncharacterized protein
STRINGXP_006486315.10.0(Citrus sinensis)
STRINGXP_006435741.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors