PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007316m
Common NameCISIN_1g007316mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 609aa    MW: 67434.8 Da    PI: 5.6207
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007316mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.51e-2970154187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW++qe+laL+++r++m++ +r+++lk+plWee+s+k++e g++rs+k+Ckek+en+ k+++++k+g+ ++  ++ +++++fdqlea
  orange1.1g007316m  70 RWPRQETLALLKIRSDMDQVFRDSSLKGPLWEEISRKLAELGYNRSAKKCKEKFENVYKYHRRTKDGRTGK--PEGKHYKFFDQLEA 154
                        8********************************************************************96..55568*******85 PP
2trihelix106.71.6e-33413498187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k ev+aLi++r+e+ ++++++  k+plWee++++mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +++s+tcpyfdql+a
  orange1.1g007316m 413 RWPKAEVQALIKFRTELANKYQENGPKGPLWEEIAAAMRSVGYNRNAKRCKEKWENINKYFKKVKESNKKR-PDDSKTCPYFDQLDA 498
                        8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.8E-467129IPR001005SANT/Myb domain
PfamPF138373.6E-2069155No hitNo description
CDDcd122033.16E-2669134No hitNo description
PROSITE profilePS500907.21369127IPR017877Myb-like domain
SMARTSM007175.8E-4410472IPR001005SANT/Myb domain
PfamPF138372.4E-23412499No hitNo description
PROSITE profilePS500907.549412470IPR017877Myb-like domain
CDDcd122031.78E-27412477No hitNo description
Gene3DG3DSA:1.10.10.603.7E-5412469IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MMLGEGDSSS ALLASSSSDA NAIAVASIGG AQDGGAAASD VGGGGSNNSA TEEDKAGRND  60
DGDRSFGGNR WPRQETLALL KIRSDMDQVF RDSSLKGPLW EEISRKLAEL GYNRSAKKCK  120
EKFENVYKYH RRTKDGRTGK PEGKHYKFFD QLEALDHHHH STAPQATTKP PAPLMQAIPW  180
TMNPPSSVPA HIKNVVTSIS AANPIQAVPQ STVIAPPTNP TVSAAAAPPL AQPVNNLPYS  240
FANVSPNLFS SSTSSSTASE EYSEERPTGT RKRKWKMFFK RLTKQVIKKQ EELQYRFLEE  300
MERRERERIV RDEAWRVQEM ARIDREHEIL IQERATAAAK DAAVIAFLQN ISGQQQIPVK  360
ENPQPPPPTV VVQPVPAVPP QPQPPATTTP NNKPAANNNN YGGNVVMSTS SSRWPKAEVQ  420
ALIKFRTELA NKYQENGPKG PLWEEIAAAM RSVGYNRNAK RCKEKWENIN KYFKKVKESN  480
KKRPDDSKTC PYFDQLDALY REKSNKSSEN NSGCYGNVKA VNHNTAPLMV LPEQQWPLHN  540
NDHLQGQNQP PLNVNQIQED DEEEEEEEEE EGNSEEGDEE EEEEEGNEGY EIVPNKAAAA  600
AAPMGNAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265273RPTGTRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.13310.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473055.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-138TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A067GVJ20.0A0A067GVJ2_CITSI; Uncharacterized protein
STRINGXP_006473055.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-124Trihelix family protein