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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
orange1.1g007853m |
| Common Name | CISIN_1g0078531mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
GRAS |
| Protein Properties |
Length: 588aa MW: 65576.2 Da PI: 4.7719 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g007853m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 447.8 | 7.1e-137 | 217 | 587 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
l++lL++cA +s+g+ e+a++++++l++++s +gdp qR+aay++e+Laar+a s++ lykal+++e + ss++laa+++++ev+P++k
orange1.1g007853m 217 LKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---SSDRLAAMQILFEVCPCFK 305
689******************************************************************9...9****************** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
f++++aN aI ea++ge+rvHiiDfdi+qG Q+++L+q++as p++ p+lR+Tgv++pes+ l+ +g rL+++Ae+lgvpfef++ v
orange1.1g007853m 306 FGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVqrLVGGLQIIGLRLESLAEALGVPFEFHA-V 396
***********************************************************99666789***********************.7 PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
++++ +++++L+++pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yys++f+sl+a+
orange1.1g007853m 397 PSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDAT 488
******************************************************************************************** PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
lpres++r++vEr++l+r+ivn++aceg+er+er e ++kWr+r+++aGF++ p+s ++++ ++ l++++ ++ y+++ee g l +gW+d++
orange1.1g007853m 489 LPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYCDR-YKLKEELGLLHFGWEDKS 579
**********************************************************************966.****************** PP
GRAS 367 LvsvSaWr 374
L+++SaW+
orange1.1g007853m 580 LIVASAWK 587
*******8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 588 aa
Download sequence Send
to blast |
MSLVSSPEPS ATSYRKTKLY TLKGSGHSSA LSTQAFGSDK HKMMCQTDSY SSENYEDYIL 60
DSPTEELIHP SSSADSGNSF QRQGAPSHQL RAGSSFPMAA QSPLDSSFMS MRRCHGYQPS 120
FESGYLENQC PDPVDYDEDT MRLKLQELER ALLDDTVGDE DDDMFATIQN MEVEGEWPEP 180
VQNVPFHDSP KESSSSDSIL SSISSNKEVS QLSPRTLKQL LIDCAATLSD GNIEEATTII 240
NELRQMVSIQ GDPPQRIAAY MVEGLAARMA ASGKFLYKAL KCKEPPSSDR LAAMQILFEV 300
CPCFKFGFMA ANGAIIEAFK GEKRVHIIDF DINQGSQYIT LIQTIASLPG NRPHLRLTGV 360
DDPESVQRLV GGLQIIGLRL ESLAEALGVP FEFHAVPSKT SLVTPSMLEC RPGEALVVNF 420
AFQLHHMPDE SVSTVNQRDQ LLRMVKSLNP KLVTVVEQDM NTNTSPFFPR FIEAYNYYSV 480
VFESLDATLP RESQDRMNVE RQCLARDIVN IIACEGEERI ERYELAGKWR ARMTMAGFTS 540
CPMSADVTDM IRKLIKQYCD RYKLKEELGL LHFGWEDKSL IVASAWK*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
