PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007908m
Common NameCISIN_1g006062mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 586aa    MW: 64211.2 Da    PI: 9.0071
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007908mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-09470518348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  orange1.1g007908m 470 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 518
                        7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.494463522IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-13465525IPR009057Homeodomain-like
SuperFamilySSF466891.64E-16465534IPR009057Homeodomain-like
SMARTSM007178.3E-10467520IPR001005SANT/Myb domain
CDDcd116608.23E-20469519No hitNo description
PfamPF002493.7E-7470518IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MEVGNLLADD KIEMHLVADA GPTGRCIFNE RSSSGMPKLE SSEGLSNSEN AEADAGKLNT  60
HLESIEEMLT KAKQEESHLL ACGSPDHSST YVLVDGQCSD QHDTLRGIDE KLQSEIPLQE  120
SDLSSQSLSK SLNNQPSIHG ECSNSSNGLV EGQRSTSAVY TSSKPEFSRL MGEICLDNLS  180
IKELHETFKA TFGRETTVKD KQWLKRRIAM GLTNSCDVST SSFIIKDNKL VSKGGEGSCN  240
KEAIEDQAVK PVDGSGKESS LNPGSKMEDQ QIVSSERLRT CSKDYSCADE DPLKEQRNAK  300
RIRKPTRRYI EELSEVESKE HGGKSIASVK NLGLGLMSSR SNTRPVRIAS SNRITLRLDS  360
LGGSGVQIPY VSRVRRSRPR KNVKALMEFH PNGIGMAAKL VKEAVDVHSS EPNRESGGIV  420
LKASSAPEQI QQQGQNMEPK NKDPSVYTPD DNPATVRAVK GGVRRKHHRA WTLSEVMKLV  480
EGVSKYGAGR WSEIKRLAFA SYSYRTSVDL KDKWRNLLKA SLAQTPPDSR MGARKHASSV  540
PIPMPVLLRV RELAEMQSQF PPNLSSSKLT GSAGRNVNET RSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374380RRSRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.19900.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465936.10.0uncharacterized protein LOC102630482 isoform X2
TrEMBLA0A067FCE00.0A0A067FCE0_CITSI; Uncharacterized protein
STRINGXP_006465933.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-102TRF-like 6