PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008187m
Common NameCISIN_1g008187mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 575aa    MW: 60949.4 Da    PI: 7.2072
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008187mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.21.2e-371702853115
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                        + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++     
  orange1.1g008187m 170 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksa 261
                        6799****************************************************************999888999999997777765443 PP

                TCP  89 ...kaaksaakskksqksaasalnlakesr 115
                                  ++  + + aa+++n ++ ++
  orange1.1g008187m 262 phsF------HGALALAAAAQHHNHHHPHH 285
                        3330......33333333333344333322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-40174346IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496175229IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MELTTDLQSN KQNTTTTTTN SASAAAELQR QQQHHRHLHL PQQQFDGRSV PFISSISIQA  60
GLSHGGGGGG SGGAVHVITS SSSTTASSST TGSSSSSSLS SSSSLTLSSP SSTNPVPPTQ  120
HAVVDASLAI ATRSSSTPAP NNQQNLNMTA TASTSTTTAI TTTTTTAPPP VKRSTKDRHT  180
KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANFS  240
TLNVSLRSSG STLSAPPSKS APHSFHGALA LAAAAQHHNH HHPHHPHPQY EEGFPHTALL  300
GFHHQQQQQQ HHLMTADQIA EALPSESGGG DNNNSNENYM RKRFREDLFK DDHTNSSNDN  360
GNNNDQSQGE SGGGGEERRK QMQNKQQQQQ VLPATPMWAV TPGPPSSGAG STFWMVTGAS  420
GAAAGAGPSE QQPQPQPQIW PFQHPVAAAT PSTATTLQAP LHFVPRFNLP TGNLEFQTGR  480
AANPLQLGSM LMHQHQHQQQ PSQQLGLGMN ESNLGMLAAL NAVYSRAGGL NMNMNMTAEQ  540
NNPMEHHHHH QHHQQQQPQG SDSGGGDEDP NNSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.6470.0fruit
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431726.10.0transcription factor TCP8
SwissprotQ9C5183e-79TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A067E9A40.0A0A067E9A4_CITSI; Uncharacterized protein
STRINGXP_006431726.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-56TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]