PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008193m
Common NameCISIN_1g0067541mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HB-PHD
Protein Properties Length: 575aa    MW: 64511.4 Da    PI: 10.0141
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008193mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.82.4e-10449494853
                        -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
           Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                         ++ +e L ++F++n  ps+  +e L+k+l+L+ ++V  WF+N R+
  orange1.1g008193m 449 PPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494
                        578899**************************************97 PP
2PHD34.35.4e-12240295151
                        SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                        +C+ C+   +  ++++vlCd +C+ +fH+kCl+++l++e++p g   w+C+ C++k
  orange1.1g008193m 240 ICAKCKLreAFPDNDIVLCDgTCNCAFHQKCLDPPLDTESIPPGdqGWFCKFCECK 295
                        588888854455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.22E-13231298IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.8E-11236296IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.077238295IPR019787Zinc finger, PHD-finger
SMARTSM002491.0E-7240293IPR001965Zinc finger, PHD-type
PfamPF006281.3E-9240295IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590241292IPR019786Zinc finger, PHD-type, conserved site
CDDcd155047.77E-31241292No hitNo description
Gene3DG3DSA:1.10.10.604.7E-12433493IPR009057Homeodomain-like
SuperFamilySSF466894.28E-10437498IPR009057Homeodomain-like
PROSITE profilePS5007112.066439499IPR001356Homeobox domain
SMARTSM003894.8E-8439503IPR001356Homeobox domain
CDDcd000864.49E-9442494No hitNo description
PfamPF000468.0E-8448494IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MPGAGKKVVK HSESGKSCFP KKDSGSELIA SLKFKKGSKI SKSKKLRSKS RCQSKTVNST  60
LLKRTVAESH SKGAGDDFAR SKSISQKNLH IKIDRKGSKN WASSKHKGKN SALVISKGNG  120
EVVDGDGETK KLRKGRSKKR RKEKVELDEA SRLQRRTRYL LIKMKLEQNL IDAYSGEGWK  180
GHSREKIRPE KELQRAKKQI LKCKIGIRDA IRQLDSLSSV GCIEGSVIAT DGSVHHEHII  240
CAKCKLREAF PDNDIVLCDG TCNCAFHQKC LDPPLDTESI PPGDQGWFCK FCECKMEIIE  300
SMNAHIGTSF SVNSNWQDIF KEEAAFPDGC SALLNQEEEW PSDDSEDDDY NPERRENSCS  360
ISRAGTDDDP SSSTSLSWFS DSETFSESMS EDEDWGPAKR RRKEKESDAV NSLMTLYGSE  420
EKYSKVKTAE VKKKLPSNAK IRRSFHRMPP NAVEKLRQVF AENELPSRIV KENLSKELSL  480
EPEKVNKWFK NARYLALKAR KVESARQVSG SPRISKESSL ETEKKNADVL TLKNSLEETL  540
ICSPKSLKKI HPKRIQNQSA VAAASRKISR KELL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132142RKGRSKKRRKE
2137141KKRRK
3399404RRRKEK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006474260.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_006474261.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_024048235.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-147PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A067F3G10.0A0A067F3G1_CITSI; Uncharacterized protein
STRINGXP_006474260.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-108pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]